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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcaattatatatgtgttttactcgttttttcatcccttttcagatactggaaaatccactgtgatgtacgcttctattgctttttgttccatgacataatttatcctcgataaag

Basic information

species Zea mays
transcript GRMZM2G454412_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G454412_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g52479.3 (Oryza sativa), 5'ss of exon 4
TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcaattatatatgtgttt---tactc----gttttttcatcccttttcagatactggaaaatcc---actgtgatgtac-gcttctattgctttttgttccat---------gacataatttatcctcgataaag
 |||| ||||||||| |||| ||||| ||||| |||||||||||||| || || || ||||| ||||||||| ||||||| ||||  ||||||||| ||||||     |||||| |   |||| ||  ||   | ||    || ||      |   |    |  |   |  |||| ||   |     |||    ||||  |  ||| |    ||||| |||||         |||| |||||  |  | ||||||
AGTGATCATGGCCCTGAAAACTGGACTAGTGGGGTTGATCTTGGCCGTCTACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAGgttgattcttttccctctattcatttgcattcatcttcagatattccagaaatacgttggactatccaatttacttgatgttttcatactactttgtattgaatctgtacacttttgctccattacaaagctgacagaatttgcctactataaag

upper sequence: GRMZM2G454412_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 4
TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcaattatatatgtgttttactcgttttttcatcccttttcagatactggaaaatccactgtgatgtacgcttctattgctttttgttccatgacataatttatcctcgataaag
  ||  ||   |||  |||||||||| |||||||||||||||||||| ||||| ||||  |||||||||||||| || | ||| |  ||| ||||| |||||| | ||        | | | ||| ||  |  | ||  | ||  |   | |       |   ||  |  |||  |  | || || ||   || ||||| ||     |                           
GTTGGTCAACCCCCAGAAAATTGGACAAGTGGAGTTGATCTTGGCCGACTTCTTGATCTCCTTGAACTTGATCTCATTACAACAAATGAAGCACTCCAAGgtttg-caaacattcagttattaataattcaaatattcaattctctcaattaa------tggcattattaaaaggctgcagt-atttagtgttttattgtttcacaat---------------------------

upper sequence: GRMZM2G454412_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G34800.1 (Glycine max), 5'ss of exon 5
TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcaattatatatgtgttttactcgttttttcatcccttttcagatactggaaaatccactgtgatgtacgcttctattgctttttgttccatgacataatttatcctcgataaag
  ||  ||   |||  |||||||||| |||||||||||||||||||| ||||| ||||  |||||||||||||| || | ||| |  ||| ||||| |||||| | ||        | | | ||| ||  |    ||  |    || | |||     |  ||| || |  |||  |  | ||  || ||  || ||||| ||     |                           
GTTGGTCAACCCCCCGAAAATTGGACAAGTGGAGTTGATCTTGGCCGACTTCTTGATCTCCTTGAACTTGATCTCATTACAACAAATGAAGCACTCCAAGgtttg-caaacattcagttattaataattcaaacattcaa----ttctctcaattaatagcag-tatta-aaaggctgcagtattg-actgttttattgtttcacaat---------------------------

upper sequence: GRMZM2G454412_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv19s0027g00520.t01 (Vitis vinifera), 5'ss of exon 4
TGTGACCATGGCCCTCAA-AATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcaattatatatgtgttttactcgttttttcatcccttttcagatactggaaaatccactgtgatgtacgcttctattgctttttgttccatgacataatttatcctcgataaag
 |    | |  ||||  | |||||||| |||| ||||||| |||| ||||||||  |||  |||||||||||||| |||| ||| || |||   |||| ||||| | | ||| |||         ||||||  || |       ||||| |  |    || |   | || || | || | | |    |      ||||  || | || |                           
-GCTGGCTTACCCCTAGAGAATTGGACAAGTGCAGTTGATATTGGGCGCCTTCTAAATCTCCTTGAACTTGATCTCATCACAACTAGTGAAGGGCTCAGAGgtttgtcctttccctaatgcc---ttatatcagt-tcccttgtgttttattgtaatattcc---tccttgatagtctaattt----tttttccctatccctctctgatttc------------------------

upper sequence: GRMZM2G454412_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv01s0011g01870.t01 (Vitis vinifera), 5'ss of exon 6
TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcaattatatatgtgttttactcgttttttcatcccttttcagatactggaaaatccactgtgatgtacgcttctattgctttttgttccatgacataatttatcctcgataaag
  ||  ||   |||  | |||||||| |||||||| |||||||| || ||||| || |  || |||||||||||||||| ||||||||||   ||  |||||| |   ||||   | |    |||  | | |    |||| |  |||  |   |  |||     |  |      |  |  | || | | ||||  ||| |                                   
GTTGGTCAACCCCCGGAGAATTGGACTAGTGGAGTAGATCTTGGACGTCTTCTTGACCTCCTCGAACTTGATCTTATCACAACCAGCGAAGGGCTTCAAGgtttgtagttttgaat-cgccaaatcgtctttagcatttatt--tttggtagcctgtttatgtttgattacctttaaatggagaggcaggctt--attacccagc------------------------------