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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGTGTCTCCAATGCTGATACAAAGGTTGACGATGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagaaatcctgtttttttgcatgtgatgcttcttttttttcagtgtctgaccacattttcgttgaatattcatgccagcccaggttattggacagccttctgccctgccctatgctatcatttttgtcttagttcagttcagcactaaaaaaactattttaacag

Basic information

species Zea mays
transcript GRMZM2G440820_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G440820_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 3
GCTAAGTGTCTCCAATGCTGATACAAAGGTTGACGATGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagaaatcctgtttttttgcatgtgatgcttcttttttttcagtgtctgaccac-attttcgttgaatattcatgccagcccaggttattggacagccttctgccctgccctatgctatcatttttgtcttagttcagttcagcactaaaaaaactattttaacag
||| ||| | || ||| | || |||| ||||||||| || || ||||| || |||||||| |||||||| ||||| || || ||||||||||| || ||||||     ||   | | |   ||| |     | ||  | |   || |  |   ||  || |    | ||| ||||| |     |||                                                                                  
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGgtag---ttcaattatatcaacatat----ttactagtatggtagagcttatgcatgatataaagtaaattttcatcctcttgcag----------------------------------------------------------------------------------

upper sequence: GRMZM2G440820_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S119_137V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTAAGTGTCTCCAATGCTGATACAAAGGTTGACGATGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagaaatcctgtttt--tttgcatgtgatgcttcttttttttcagtgtctgaccacattttcgttgaatattcatgccagcccaggttattggacagccttctgccctgccctatgctatcatttttgtcttagttcagttcagcactaaaaaaactattttaacag
  | ||||     ||||| || |||   || || |||||||||||||| ||||| ||||| || ||||| |||||||| || |||||||| || || ||||| | |  | || ||||  | || ||    ||  |       ||   |||          || ||| |||| | | |     ||    |         |  || |                                                                
TTTGAGTGCTGGTAATGCGGAGACACGCGTAGATGATGCTGAATTTGAGGAAAACGAAGTTTACGCAATTGATATTGTAACAAGCACTGGTGAAGGAAAGgtgaaattttctattttgttctgtatactctgggtgcaagagtttgttgtacattgctgattacgtagaatgt-cttagtgacctgaatcga-----ggtttttta---------------------------------------------------------------

upper sequence: GRMZM2G440820_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S80_199V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTAAGTGTCTCCAATGCTGATACAAAGGTTGACGATGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaag-----aaatcctgtttttttgcatgtgatgcttcttttttttcagtgtctgaccacattttcgttgaatattcatgccagcccaggttattggacagccttctgccctgccctatgctatcatttttgtcttagttcagttcagcactaaaaaaactattttaacag
 || || || |||||  | || ||    || || |||||||| ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || || |||||||      |||   | ||||     || | |   |      | | | ||  ||     |||||||      | ||    |      ||||| |    |                                                                        
TCTGAGCGTGTCCAACCCAGAGACGCGTGTAGATGATGCTGAGTTTGAGGAAAACGAAGTGTACGCAATAGATATCGTGACCAGCACTGGTGATGGAAAGgtaattttctaaacattcttttcagcgatatcaacttctaccatatacggttactaggagcattttcaactgttgtttgaacagaatgaggttttgcttc------------------------------------------------------------------------