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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGGACTCCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAGgtccgtgcgcggcctccttccgccacatcttgtttttctcccgtttccgtttaggctgggtgcattcgcgcggggagggtttgagtggttcatccccatg...

Basic information

species Zea mays
transcript GRMZM2G413857_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G413857_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g09670.1 (Oryza sativa), 5'ss of exon 1
----------------------------------------ATGGGGGACTCCAGCGGCTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTCGGCGGCAAGgtccgtgcgcggcctccttccgccacatcttgtttttctcccgtttccgtttaggctgggtgcattcgcgcggggagggtttgagtggttcatccccatg--------
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GGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGgtccgtgcgc--tctgctttcggtctctcccgtttcttgcttgattcccctc---cttcaagc-ttggtttggtggggatttgtgt--tttggtttcatggtggttaa