1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCCCAGATCCGGCGCCGCCTCCGCCCTCACTTACACTAGCACGCACGGCGGACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagcctcccacagtcccactcccgattaatttacttaaccgccgctattaatacaccgtcccgcccgcccgcccgccccctcctcggctcctcc...
species | Zea mays |
transcript | GRMZM2G412899_T05 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|101396771|gb|EB820311.1|EB820311
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|149026990|gb|EE046327.2|EE046327
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|211188618|gb|FL343312.1|FL343312
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|71775492|gb|DR973370.1|DR973370
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|148947449|gb|EC892877.2|EC892877
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|211528530|gb|FL329329.1|FL329329
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|148974492|gb|EE025275.2|EE025275
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|74240466|gb|DT648380.1|DT648380
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|71321131|gb|DR797264.1|DR797264
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|50326106|gb|CO521232.1|CO521232
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|78112346|gb|DV530740.1|DV530740
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|148935890|gb|EC879938.2|EC879938
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|76015720|gb|DT942890.1|DT942890
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|32802533|gb|CD954769.1|CD954769
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAA CGGCGATGCGGTGGAAGCTTAEST: gi|149104318|gb|EE289761.2|EE289761
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|78109755|gb|DV528171.1|DV528171
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|149015283|gb|EE045085.2|EE045085
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|71439810|gb|DR820860.1|DR820860
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|78110187|gb|DV528602.1|DV528602
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|71438358|gb|DR819408.1|DR819408
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|149095879|gb|EE181538.2|EE181538
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|32802215|gb|CD954451.1|CD954451
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAEST: gi|71774118|gb|DR972000.1|DR972000
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|71764940|gb|DR962877.1|DR962877
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAEST: gi|148966112|gb|EE017056.2|EE017056
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCAGATCCGGCGCCGCCTCCGCCCTCACTTACACTAGCACGCACGGCGGACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagcctcccacagtcccactcccgattaatttacttaaccgccgctattaatacaccgtcccgcccgcccgcccgccccctcctcggctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc