1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGCCCTTTGTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccgccgctcccccgcagcccccacccccgatccggtttgttgttaatagtagtttccgccgatctggtttgttgctcgtagtagtttcgcttg...
species | Zea mays |
transcript | GRMZM2G376727_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|9255123|gb|BE345591.1|BE345591
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGATCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|60347158|gb|DN214131.1|DN214131
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|78080233|gb|DV508645.1|DV508645
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|149106143|gb|EE291820.2|EE291820
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|60355754|gb|DN222727.1|DN222727
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|30706031|gb|CD059006.1|CD059006
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|78107599|gb|DV526017.1|DV526017
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|60354184|gb|DN221157.1|DN221157
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|211379488|gb|FL165247.1|FL165247
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|21987232|gb|BQ778760.1|BQ778760
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|211354951|gb|FL243591.1|FL243591
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|74243940|gb|DT651854.1|DT651854
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|16919381|gb|BM074163.1|BM074163
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: CCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|24765720|gb|CA400879.1|CA400879
genomic: CCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: ACAACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATTEST: gi|211130311|gb|FL066378.1|FL066378
genomic: ACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: AACCAGGGATCCGC GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: AACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCCTTTGTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccgccgctcccccgcagcccccacccccgatccggtttgttgttaatagtagtttccgccgatctggtttgttgctcgtagtagtttcgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc