1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCCCAAGGTCAGGGGCTCCCCCGTCGTCTACAGGCGATCCTTCCTCGAGAAGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaaaatacatcctccttggtcttcatccatgctcgtgcgtgccttcttatcttacgttgcgccgcctctctgtctactgcatggcttgcag
species | Zea mays |
transcript | GRMZM2G363460_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGGEST: gi|33468109|gb|CF245158.1|CF245158
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGGEST: gi|149085990|gb|EE175517.2|EE175517
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGGEST: gi|148946560|gb|EC885619.2|EC885619
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGGEST: gi|76913179|gb|DV165031.1|DV165031
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGGEST: gi|148971702|gb|EE022431.2|EE022431
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCAAGGTCAGGGGCTCCCCCGTCGTCTACAGGCGATCCTTCCTCGAGAAGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaaaatacatcctccttggtcttcatccatgctcgtgcgtgccttcttatcttacgttgcgccgcctctctgtctactgcatggcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC