1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACACTGGTTTGGCGCGAGACCATGGAGGGATCCCTGGAGGCGCGGCCCGGTGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctcgccgtcctcctttccttatgtttcggtttccttctcccgatttgactgcgaaacatcgagtgggttgagttgttgaactatttaggatct...
species | Zea mays |
transcript | GRMZM2G314386_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGTACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|71442944|gb|DR823994.1|DR823994
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|149044645|gb|EE047617.2|EE047617
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|32837769|gb|CD977447.1|CD977447
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|148970703|gb|EE021421.2|EE021421
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|211311913|gb|FL092761.1|FL092761
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|74239171|gb|DT647085.1|DT647085
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|71449060|gb|DR830110.1|DR830110
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|211311911|gb|FL092759.1|FL092759
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCAKCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|148965413|gb|EE016213.2|EE016213
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|148933697|gb|EC877601.2|EC877601
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|211311912|gb|FL092760.1|FL092760
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|149073230|gb|EE161514.2|EE161514
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|32838159|gb|CD977837.1|CD977837
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAG-TGTTCTTCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|71442943|gb|DR823993.1|DR823993
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|211311910|gb|FL092758.1|FL092758
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCNAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCEST: gi|71775328|gb|DR973206.1|DR973206
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACTGGTTTGGCGCGAGACCATGGAGGGATCCCTGGAGGCGCGGCCCGGTGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctcgccgtcctcctttccttatgtttcggtttccttctcccgatttgactgcgaaacatcgagtgggttgagttgttgaactatttaggatct
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