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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCTGATGTGCCATTTTATTTTACAGGCTTATAATAGGTGTCCATCCCCCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCGgtaggtcatttgttgttgtcagcatctgtagactgagcgaagataacttatcatatatgtctagttgcttttttggtatttttctgttatataggtagaa...

Basic information

species Zea mays
transcript GRMZM2G180815_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180815_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g44394.1 (Oryza sativa), 5'ss of exon 9
ACCTCTGATGTGCCATTTTATTTTACAGGCTTATAATAGGTGTCCATCCCCCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCGgtaggtcatttgttgttgtcagcatc-tgtagactgagcgaagataacttatcatatatgtctagttgcttttttggtatttttctgttatataggtagaa--
                            ||||  |||| |||||| || ||||||||||||||  |||||||||| |||||||| ||||||||||| ||||||||  || | |||   || ||| | |   || |      | ||   || | |  | ||  || ||  ||  | | | | |||||  |  || |  |     
----------------------------GCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGATGGCTCAATATTTGCTTATGCGgtaggctatctcttgccatctgcaccataatgaattgttagacatgcattgttacttctga-tactt--ttgctagatttatttctcctggattgtcattcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352181|gb|DN219154.1|DN219154
EST:     CCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCG                         GTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA
genomic: CCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCGgtaggtcatt ... atttgtttagGTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA
EST: gi|71758033|gb|DR955970.1|DR955970
EST:     CCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCG                         GTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTTTACTGCA
genomic: CCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCGgtaggtcatt ... atttgtttagGTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA
EST: gi|211532431|gb|FL471823.1|FL471823
EST:     CCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCG                         GTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA
genomic: CCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCGgtaggtcatt ... atttgtttagGTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA
EST: gi|9254555|gb|BE345023.1|BE345023
EST:     CCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCG                         GTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA
genomic: CCATCACATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCGgtaggtcatt ... atttgtttagGTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA
EST: gi|74235194|gb|DT643108.1|DT643108
EST:     CATCACAATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCG                         GTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA
genomic: CATCAC-ATGCAGCGCATTCAATCATGATGGCTCTATATTTGCTTACGCGgtaggtcatt ... atttgtttagGTATGTTATGATTGGAGCAAAGGTGCTGAGAAGCATAATCCTTCTACTGCA