1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTCGGCGAGGGACGAGCATCTTGATGGGATTCGCGCGCTGATGGCGGCCCACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccgcgccacgcccccgcgcagatcgggggtggatcggatctcctgttggggtccgctgggctagcgttagggttttatttgatcggttcgttctacggattgatcctggctgtggattgtttgtgcag
species | Zea mays |
transcript | GRMZM2G169095_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|211311973|gb|FK981213.1|FK981213
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|148948656|gb|EC898570.2|EC898570
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|21987275|gb|BQ778803.1|BQ778803
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|211311976|gb|FK981216.1|FK981216
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|211311972|gb|FK981212.1|FK981212
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTYKCCGCCGCTCSACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTAYGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|78113783|gb|DV532172.1|DV532172
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|211311975|gb|FK981215.1|FK981215
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|149085325|gb|EE174831.2|EE174831
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTCEST: gi|211311974|gb|FK981214.1|FK981214
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
EST: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAG AGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
genomic: ACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccg ... gtttgtgcagAGCGAGTACGTGTCGGAGCAGGATAAACGGCGGGAGTTCATCTCCGGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGGCGAGGGACGAGCATCTTGATGGGATTCGCGCGCTGATGGCGGCCCACTCGCCGCCGCTCCACGGGCTGGTCGTCCCCTCCGAGGATGCCCACCAGgtccgtgccgcgccacgcccccgcgcagatcgggggtggatcggatctcctgttggggtccgctgggctagcgttagggttttatttgatcggttcgttctacggattgatcctggctgtggattgtttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG