1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAGCCGGGGCCGTGATGCGCGTTCATGTATAGTGTCTGGAAAGGGCTACGGAAAGCGTTCGTTTTTAGCTCATGCTGAATTTTACCGTACCTGTAAGCTgtaagtgtcgatctatcccaagttcgacttaaatgtatgtgtaattgtttgagttgggtggccagggtaattagctgtatctcgttttgggaggcaccctgcttctgataatatttccgttcagatatggttgatgtttatgcgggtaagttttaattatggcattgcgcag
species | Zea mays |
transcript | GRMZM2G167728_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAAAGCGTTCGTTTTTAGCTCATGCTGAATTTTACCGTACCTGTAAGCT GAAGGCGGAAGCCGCACACCCGTCAAATGCATGCCCTGCTCTAGAACGTACEST: gi|71416956|gb|DR803873.1|DR803873
genomic: GGAAAGCGTTCGTTTTTAGCTCATGCTGAATTTTACCGTACCTGTAAGCTgtaagtgtcg ... cattgcgcagGAAGGCGGAAGCCGCACACCCGTCAAATGCATGCCCTGCTCTAGAACGTAC
EST: GGAAAGCGTTCGTTTTTAGCTCATGCTGAATTTTACCGTACCTGTAAGCT GAAGGCGGAAGCCGCACACCCGTCAAATGCATGCCCTGCTCTAGAACGTACEST: gi|76294155|gb|DV033723.1|DV033723
genomic: GGAAAGCGTTCGTTTTTAGCTCATGCTGAATTTTACCGTACCTGTAAGCTgtaagtgtcg ... cattgcgcagGAAGGCGGAAGCCGCACACCCGTCAAATGCATGCCCTGCTCTAGAACGTAC
EST: GGAAAGCGTTCGTTTTTAGCTCATGCTGAATTTTACCGTACCTGTAAGCT GAAGGCGGAAGCCGCACACCCGTCAAATGCATGCCCTGCTCTAGAACGTAC
genomic: GGAAAGCGTTCGTTTTTAGCTCATGCTGAATTTTACCGTACCTGTAAGCTgtaagtgtcg ... cattgcgcagGAAGGCGGAAGCCGCACACCCGTCAAATGCATGCCCTGCTCTAGAACGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCCGGGGCCGTGATGCGCGTTCATGTATAGTGTCTGGAAAGGGCTACGGAAAGCGTTCGTTTTTAGCTCATGCTGAATTTTACCGTACCTGTAAGCTgtaagtgtcgatctatcccaagttcgacttaaatgtatgtgtaattgtttgagttgggtggccagggtaattagctgtatctcgttttgggaggcaccctgcttctgataatatttccgttcagatatggttgatgtttatgcgggtaagttttaattatggcattgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG