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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGACGCCGAGCCCGCCTCCGCGGGCGCCGAGGCCGCGGTGGCGCCGTTCCGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctccctgtttttccgcttgcagtcttgtgagatgggtgattccgttcacgcgtgcgtgctcggcgtag

Basic information

species Zea mays
transcript GRMZM2G160458_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160458_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 1
CCGACGCCGAGCCCGCCTCCGCGGGCGCCGAGGCCGCGGTGGCGCCGTTCCGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtg---------------ctccctgtttttccgcttgcagtcttgtga-gatgggtgattccgttcacgcgtgcgtgc-tcggcgtag---------------------------------
||   |  |     |     || | |||||  ||||| | |||||||||||| |||| ||||||||| ||| | |||||||||||||||||||  ||  ||||||||               |||  | ||||| || | |  ||  ||||  |  || |   ||  || | | |||  ||  | |   | |                                 
CCTCTGAGGGAGAAGAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTGACCTGCTCCCGCCGAATCAACTACCGgtgagtggcgccgcaccgcgcgctcgtttttttttcgttcggtgtgatgtggcggcggatagatcgattgatgtgtggatgtgttgtttttgtggggggattggggtggtgggttttgctcgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71429209|gb|DR810259.1|DR810259
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211315589|gb|FL415376.1|FL415376
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTTATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|148946148|gb|EC891442.2|EC891442
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|148996317|gb|EE035601.2|EE035601
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211523936|gb|FL381035.1|FL381035
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211497254|gb|FL426003.1|FL426003
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCG
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCG
EST: gi|211461043|gb|FL374801.1|FL374801
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211395866|gb|FL418052.1|FL418052
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|50323762|gb|CO518888.1|CO518888
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211153699|gb|FL418636.1|FL418636
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211469267|gb|FL411603.1|FL411603
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211049012|gb|FL423466.1|FL423466
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211130983|gb|FL371912.1|FL371912
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211364314|gb|FL429339.1|FL429339
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211491477|gb|FL425970.1|FL425970
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|71301915|gb|DR787034.1|DR787034
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|50326773|gb|CO521899.1|CO521899
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211527534|gb|FL409937.1|FL409937
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|78089924|gb|DV518298.1|DV518298
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|9952850|gb|BE639433.1|BE639433
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|71429926|gb|DR810976.1|DR810976
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|148939576|gb|EC884188.2|EC884188
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGGAGGGCGTGGTGGCGCTGCTCCCGCATGCCAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211204300|gb|FL385169.1|FL385169
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|88752961|gb|DY537102.1|DY537102
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAAAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211131903|gb|FL371917.1|FL371917
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211482289|gb|FL401972.1|FL401972
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211204896|gb|FL411811.1|FL411811
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211027924|gb|FL425590.1|FL425590
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211002651|gb|FL371731.1|FL371731
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|149070866|gb|EE159275.2|EE159275
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211388045|gb|FL420204.1|FL420204
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAG
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAG
EST: gi|32842309|gb|CD981990.1|CD981990
EST:     CTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|50332851|gb|CO527977.1|CO527977
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|71426064|gb|DR807114.1|DR807114
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211376858|gb|FL402408.1|FL402408
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211162924|gb|FL392806.1|FL392806
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|33468120|gb|CF245169.1|CF245169
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
EST: gi|211471797|gb|FL411621.1|FL411621
EST:     CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAG                         GTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA
genomic: CGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 288

CCGACGCCGAGCCCGCCTCCGCGGGCGCCGAGGCCGCGGTGGCGCCGTTCCGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGGAACGCGCTGAACGAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 121

CCGACGCCGAGCCCGCCTCCGCGGGCGCCGAGGCCGCGGTGGCGCCGTTCCGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGGAACGCGCTGAACGAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 202

CCGACGCCGAGCCCGCCTCCGCGGGCGCCGAGGCCGCGGTGGCGCCGTTCCGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGGAACGCGCTGAACGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 102

CCGACGCCGAGCCCGCCTCCGCGGGCGCCGAGGCCGCGGTGGCGCCGTTCCGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctc ... ctcggcgtagGTATCGGCACCTGATGCAGGACGTGCTGTCGCTGCTCCCGCATGCGAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGGAACGCGCTGAACGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGACGCCGAGCCCGCCTCCGCGGGCGCCGAGGCCGCGGTGGCGCCGTTCCGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGAATCACGTATAGgtgagtgctccctgtttttccgcttgcagtcttgtgagatgggtgattccgttcacgcgtgcgtgctcggcgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA