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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGGTACACGAGGGCAAGGACGGCGCCTCACGCTGGGTCGTCCGCCCCAAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacggatgcagcggccctagcctcactctctgtgaaccctcctcctcccgtgctcagtcaaatcctccgtcgagatcaactggtcggcgttccct...

Basic information

species Zea mays
transcript GRMZM2G155242_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 1
AGCTGGTACACGAGGGCAAGGACGGCGCCTCACGCTGGGTCGTCCGCCCCAAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacggatgcagcggccctagcctcactctctgtgaaccctcctcctcccgtgctcagtcaaatcctccgtcgagatcaactggtcggcgttccct---
||||||| |||||| || | ||||||||||| |||||| ||||||||||||||||||||   ||||||||||||||||  ||| ||||||||||||||||||| | ||  ||  | |  | |    |   |  |||||  |||   | | | |  | |   |||    |     |||   ||   |  ||| |   |  |   
AGCTGGTGCACGAGAGCCACGACGGCGCCTCCCGCTGGATCGTCCGCCCCAAGTCCGTCCGCTACAACTTCCGGACCACCACCACCGTCCCCAAGCTCGGgtacgcacccat-taccctcgccgatcgatcgatctgtccaccgatcgctttcgatccggcgtccgtcctgttctcgttttcgttt--tcgtctcccgtttgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211253253|gb|FL003863.1|FL003863
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|31358692|gb|CD443049.1|CD443049
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|31359517|gb|CD443874.1|CD443874
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|8368121|gb|BE051066.1|BE051066
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211253245|gb|FL003855.1|FL003855
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211032316|gb|FK948197.1|FK948197
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211032319|gb|FK948200.1|FK948200
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|31353717|gb|CD438074.1|CD438074
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211032317|gb|FK948198.1|FK948198
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTG-ATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
EST: gi|149104837|gb|EE290302.2|EE290302
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211083904|gb|FL003852.1|FL003852
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|148934898|gb|EC878944.2|EC878944
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|31350876|gb|CD435233.1|CD435233
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|8368120|gb|BE051065.1|BE051065
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211037211|gb|FK948220.1|FK948220
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211032306|gb|FK948187.1|FK948187
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211253247|gb|FL003857.1|FL003857
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGG-AGGCAACAACGGGTCCACGCTGACGGCTG
EST: gi|149095755|gb|EE181394.2|EE181394
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211034765|gb|FK948208.1|FK948208
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGG-TGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
EST: gi|76019942|gb|DT947112.1|DT947112
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211083903|gb|FL003851.1|FL003851
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|31357666|gb|CD442023.1|CD442023
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|22472362|gb|BU036842.1|BU036842
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211039658|gb|FK948233.1|FK948233
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211029844|gb|FK948184.1|FK948184
EST:     AAGTCCGTCAAGTACAACTTCCGGACCRGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|31349014|gb|CD433371.1|CD433371
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211037210|gb|FK948219.1|FK948219
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGG-TGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
EST: gi|20208127|gb|BQ134201.1|BQ134201
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211083902|gb|FL003850.1|FL003850
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|26558443|gb|CA830678.1|CA830678
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGCGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211253248|gb|FL003858.1|FL003858
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211032311|gb|FK948192.1|FK948192
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGG-TGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
EST: gi|211083899|gb|FL003847.1|FL003847
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211032315|gb|FK948196.1|FK948196
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211034769|gb|FK948212.1|FK948212
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGG-TGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
EST: gi|211083895|gb|FL003843.1|FL003843
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211253252|gb|FL003862.1|FL003862
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|31359585|gb|CD443942.1|CD443942
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|149103373|gb|EE288760.2|EE288760
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211034759|gb|FK948202.1|FK948202
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211253246|gb|FL003856.1|FL003856
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211083898|gb|FL003846.1|FL003846
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|6587616|gb|AW244934.1|AW244934
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|21843169|gb|BQ703765.1|BQ703765
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGG
EST: gi|211029842|gb|FK948182.1|FK948182
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGG-TGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
EST: gi|211032307|gb|FK948188.1|FK948188
EST:     AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGG                         GGTGATGCTTGTGGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTG
genomic: AAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGG-TGGGGAGGCAACAACGGGTCCACGCTGACGGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 241

AGCTGGTACACGAGGGCAAGGACGGCGCCTCACGCTGGGTCGTCCGCCCCAAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 42

AGCTGGTACACGAGGGCAAGGACGGCGCCTCACGCTGGGTCGTCCGCCCCAAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA


Block sizes: 49 (upstream exon), 34 (downstream exon)
Score: 8

AGCTGGTACACGAGGGCAAGGACGGCGCCTCACGCTGGGTCGTCCGCCCCAAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 101

AGCTGGTACACGAGGGCAAGGACGGCGCCTCACGCTGGGTCGTCCGCCCCAAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacgg ... ggtggtgcagGGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTGGTACACGAGGGCAAGGACGGCGCCTCACGCTGGGTCGTCCGCCCCAAGTCCGTCAAGTACAACTTCCGGACCAGAACCGCCGTCCCCAAGCTCGGgtatgtacggatgcagcggccctagcctcactctctgtgaaccctcctcctcccgtgctcagtcaaatcctccgtcgagatcaactggtcggcgttccct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctcc
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