1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCGAGCTCGACAAGGCCTCCATAATCCGCCGCGCCGGACTGCCCCCGCGCGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacacccagctgccccctctctccctgccctatttaatagtccatcattttttttgtggtgataatagcaagaaaacgcaaactttgtatcgtactagtaatttagaacgatttattctgcag
species | Zea mays |
transcript | GRMZM2G145794_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|93016532|gb|EB642052.1|EB642052
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|71438847|gb|DR819897.1|DR819897
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|71439369|gb|DR820419.1|DR820419
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|148931687|gb|EC874878.2|EC874878
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|89759049|gb|DY687995.1|DY687995
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|76292915|gb|DV032483.1|DV032483
genomic: CCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|149086562|gb|EE176105.2|EE176105
genomic: CCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|71308187|gb|DR790327.1|DR790327
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|78087227|gb|DV515620.1|DV515620
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|91055354|gb|EB165772.1|EB165772
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|148978866|gb|EE026356.2|EE026356
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|78103764|gb|DV522192.1|DV522192
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTAEST: gi|148982074|gb|EE028118.2|EE028118
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
EST: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCG CTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
genomic: CGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacac ... tattctgcagCTAGGGAGAAGGCGATGGTGATCAACCTCGAATTCATCAGGGCGATAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGAGCTCGACAAGGCCTCCATAATCCGCCGCGCCGGACTGCCCCCGCGCGACCTACGCATCCTCGGCCCCGTTTTCTCTCGCTCCTCCAGCATCCTCGgtgagcacacccagctgccccctctctccctgccctatttaatagtccatcattttttttgtggtgataatagcaagaaaacgcaaactttgtatcgtactagtaatttagaacgatttattctgcag
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