Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCTCGATTCGGCCGTTTTCCGCATCCACGGTGCCAGGCGACCGCCGCCGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccccatccccttccttctctgcgaaactgagcacttgaccccgaaccctaattcaagctactgtatttggctatctatatccggatctgatccaatcacaagcgcaagtgtctgcacgtatcgtccctgctaatttcgttctttatatcctttgttggatccgccgctgcctcctgcattccattccag

Basic information

species Zea mays
transcript GRMZM2G143627_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211225468|gb|FL266142.1|FL266142
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|60354548|gb|DN221521.1|DN221521
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211221345|gb|FL266117.1|FL266117
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATTACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|60401166|gb|DN233973.1|DN233973
EST:     CTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211062735|gb|FL266085.1|FL266085
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|60393899|gb|DN226769.1|DN226769
EST:     CCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211221337|gb|FL266109.1|FL266109
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|31997738|gb|CD661749.1|CD661749
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211229594|gb|FL266178.1|FL266178
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211227529|gb|FL266159.1|FL266159
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGAAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|4730668|gb|AI649834.1|AI649834
EST:     CGACGACTAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|93016913|gb|EB642433.1|EB642433
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211062727|gb|FL266077.1|FL266077
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|6564227|gb|AW231849.1|AW231849
EST:     GCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: GCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211219269|gb|FL266097.1|FL266097
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211219268|gb|FL266096.1|FL266096
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211221349|gb|FL266121.1|FL266121
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211225464|gb|FL266138.1|FL266138
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211059784|gb|FL266074.1|FL266074
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211225476|gb|FL266150.1|FL266150
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211221344|gb|FL266116.1|FL266116
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|29946713|gb|CB816288.1|CB816288
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211062738|gb|FL266088.1|FL266088
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|31441015|gb|CD510446.1|CD510446
EST:     CGCTTCCCTACTTACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211227522|gb|FL266152.1|FL266152
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211227528|gb|FL266158.1|FL266158
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211225471|gb|FL266145.1|FL266145
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|5740154|gb|AI947844.1|AI947844
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|31611883|gb|CD568505.1|CD568505
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211221346|gb|FL266118.1|FL266118
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211225466|gb|FL266140.1|FL266140
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211059783|gb|FL266073.1|FL266073
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|28910142|gb|CB331283.1|CB331283
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|31997740|gb|CD661750.1|CD661750
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211062729|gb|FL266079.1|FL266079
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211221342|gb|FL266114.1|FL266114
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211219277|gb|FL266105.1|FL266105
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211062731|gb|FL266081.1|FL266081
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211229587|gb|FL266171.1|FL266171
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211227533|gb|FL266163.1|FL266163
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211227523|gb|FL266153.1|FL266153
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211223401|gb|FL266126.1|FL266126
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAG                         GATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211229593|gb|FL266177.1|FL266177
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
EST: gi|211227524|gb|FL266154.1|FL266154
EST:     CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCG-CCACCACGGCAG                         GATGACGACGCTGAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT
genomic: CGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 155

CACGCTCGATTCGGCCGTTTTCCGCATCCACGGTGCCAGGCGACCGCCGCCGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGATCGTGAAGGAGCTGCGCTCGTACGAGAAGGAGGTGGAGAAGGAGGCTGCC


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 85

CACGCTCGATTCGGCCGTTTTCCGCATCCACGGTGCCAGGCGACCGCCGCCGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGATCGTGAAGGAGCTGCGCTCGTACGAGAAGGAGGTGGAGAAGGAGGCTGCC


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 62

CACGCTCGATTCGGCCGTTTTCCGCATCCACGGTGCCAGGCGACCGCCGCCGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGATCGTGAAGGAGCTGCGCTCGTACGAGAAGGAGGTGGAGAAGGAGGCTGCC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 75

CACGCTCGATTCGGCCGTTTTCCGCATCCACGGTGCCAGGCGACCGCCGCCGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccc ... tccattccagGATGACGACGCTCAGGAACCTCAAGATCAAGACGTCGACGTGCAAGAGGATCGTGAAGGAGCTGCGCTCGTACGAGAAGGAGGTGGAGAAGGAGGCTGCC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGCTCGATTCGGCCGTTTTCCGCATCCACGGTGCCAGGCGACCGCCGCCGCTTCCCTACTCACCCTTGGCCGGCGACGACGAGCGCCCACTACGGCAGgtacgccccccatccccttccttctctgcgaaactgagcacttgaccccgaaccctaattcaagctactgtatttggctatctatatccggatctgatccaatcacaagcgcaagtgtctgcacgtatcgtccctgctaatttcgttctttatatcctttgttggatccgccgctgcctcctgcattccattccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGGCGACG