1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGCATCGGATTGTCCCCGCCCCCGCTAGGCGCCATGAAGCTGACGGTGAAGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatattccgatccccatttcatttttgaaatctttctcgtgcttcttatcagggacgcgtcgtgggtgcgagcgctcgtggcccctcagatcaatg...
species | Zea mays |
transcript | GRMZM2G143462_T06 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGWGATWCNAGGGAAAGACAGCTATEST: gi|74242202|gb|DT650116.1|DT650116
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|148995692|gb|EE034914.2|EE034914
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211488320|gb|FK957010.1|FK957010
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491201|gb|FK957022.1|FK957022
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATTGAAGAGATACAAGGGAAAGACAGCTATEST: gi|89759371|gb|DY688230.1|DY688230
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|30306905|gb|CD001578.1|CD001578
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211494075|gb|FK957027.1|FK957027
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAG-CCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211488314|gb|FK957004.1|FK957004
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|20300760|gb|BQ163703.1|BQ163703
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491197|gb|FK957018.1|FK957018
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAG-CCAACGACACG ATTATGGCTGTGAAGAAGAATATTGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491203|gb|FK957024.1|FK957024
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491196|gb|FK957017.1|FK957017
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCATCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|148947026|gb|EC892323.2|EC892323
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491191|gb|FK957012.1|FK957012
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|89758471|gb|DY687642.1|DY687642
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211488319|gb|FK957009.1|FK957009
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211488318|gb|FK957008.1|FK957008
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|89761592|gb|DY689541.1|DY689541
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491193|gb|FK957014.1|FK957014
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491205|gb|FK957026.1|FK957026
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAG-CCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491192|gb|FK957013.1|FK957013
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCATCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|78111156|gb|DV529553.1|DV529553
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|148999208|gb|EE036127.2|EE036127
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211491194|gb|FK957015.1|FK957015
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATTGAAGAGATACAAGGGAAAGACAGCTATEST: gi|37423537|gb|CF649496.1|CF649496
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|93280956|gb|EB673220.1|EB673220
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|211488316|gb|FK957006.1|FK957006
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATTGAAGAGATACAAGGGAAAGACAGCTATEST: gi|20300388|gb|BQ163331.1|BQ163331
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|149095756|gb|EE181396.2|EE181396
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|71771539|gb|DR969476.1|DR969476
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTATEST: gi|32805412|gb|CD957648.1|CD957648
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: GATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATTGAAGAGGTACAAGGAAAAGACAGCTATEST: gi|76912415|gb|DV164721.1|DV164721
genomic: GATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
EST: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACG ATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
genomic: AGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatatt ... tatttaccagATTATGGCTGTGAAGAAGAATATAGAAGAGATACAAGGGAAAGACAGCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCATCGGATTGTCCCCGCCCCCGCTAGGCGCCATGAAGCTGACGGTGAAGACCCTCAAGGGAACGCACTTCGAGATCCGGGTGCAGCCCAACGACACGgtgagatattccgatccccatttcatttttgaaatctttctcgtgcttcttatcagggacgcgtcgtgggtgcgagcgctcgtggcccctcagatcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcag