1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGCCGCTCCGGCGGGGTCGGCACTGGTGACTCGCCGGTGAGTTGGGACGACGACGACGATGACTGCAGCGGCGGCGGCGGCCGCGTCGAAGGCTTGGCGgtgagctctcgcctccgttctctctgcgtgtttcattctgttaagtttggttggttgcgtgtacgcgtccttcagctgagttggtcttgccgaggagcgt...
species | Zea mays |
transcript | GRMZM2G128608_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACGACGATGACTGCAGCGGCGGCGGCGGCCGCGTCGAAGGCTTGTGCG GGACTCCACATATTTGACCAAGAGGCAGACGAGCCACCAGCCAAAAACAGEST: gi|19350976|gb|BM895508.1|BM895508
genomic: CGACGACGATGACTGCAGCGGCGGCGGCGGCCGCGTCGAAGGCTTG-GCGgtgagctctc ... cctgatatagGGACTCCACATATTTGACCAAGAGGCAGACGAGCCACCAGCCAAAAACAG
EST: ACGACGACGATGACTGCAGCGGCGGCGGCGGCCGCGTCGAAGGCTTGGCG GGACTCCACATATTTGACCAAGAGGCAGACGAGCCACCAGCCAAAAACAGCEST: gi|19350975|gb|BM895507.1|BM895507
genomic: ACGACGACGATGACTGCAGCGGCGGCGGCGGCCGCGTCGAAGGCTTGGCGgtgagctctc ... cctgatatagGGACTCCACATATTTGACCAAGAGGCAGACGAGCCACCAGCCAAAAACAGC
EST: ACGACGACGATGACTGCAGCGGCGGCGGCGGCCGCGTCGAAGGCTTGGCG GGACTCCACATATTTGACCAAGAGGCAGACGAGCCACCAGCCAAAAACAGC
genomic: ACGACGACGATGACTGCAGCGGCGGCGGCGGCCGCGTCGAAGGCTTGGCGgtgagctctc ... cctgatatagGGACTCCACATATTTGACCAAGAGGCAGACGAGCCACCAGCCAAAAACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCCGCTCCGGCGGGGTCGGCACTGGTGACTCGCCGGTGAGTTGGGACGACGACGACGATGACTGCAGCGGCGGCGGCGGCCGCGTCGAAGGCTTGGCGgtgagctctcgcctccgttctctctgcgtgtttcattctgttaagtttggttggttgcgtgtacgcgtccttcagctgagttggtcttgccgaggagcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcctcc