1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCGTCGAAGCACCCTAGTCGTCGTAGCGGCCTACGGGCTCTTGGGCAGAGAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatgatgatatgtcagctacgcaatttggattcctgctagtgcttcgacgaagtgactgacggtgttttccgtgttggtgcag
species | Zea mays |
transcript | GRMZM2G119265_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-CCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225710|gb|FL051790.1|FL051790
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCASCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211223637|gb|FL051767.1|FL051767
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|101397267|gb|EB820557.1|EB820557
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225697|gb|FL051777.1|FL051777
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATT GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGAYGCGCGGGAGGEST: gi|211225709|gb|FL051789.1|FL051789
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-CCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211221584|gb|FL051760.1|FL051760
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-CCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225698|gb|FL051778.1|FL051778
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211227757|gb|FL051793.1|FL051793
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-SCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225704|gb|FL051784.1|FL051784
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCASCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225703|gb|FL051783.1|FL051783
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCKGCTGCGCGCACTGATG GCACTGACGGAACGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225708|gb|FL051788.1|FL051788
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-CCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|149112056|gb|EE191226.2|EE191226
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211221585|gb|FL051761.1|FL051761
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-CCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211223632|gb|FL051762.1|FL051762
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-CCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211223639|gb|FL051769.1|FL051769
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-SCGCAGCTGGAGAAGAAGCCGACGCGCGGGAKGEST: gi|211225700|gb|FL051780.1|FL051780
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211223644|gb|FL051774.1|FL051774
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211221583|gb|FL051759.1|FL051759
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: AAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211227756|gb|FL051792.1|FL051792
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-CCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225699|gb|FL051779.1|FL051779
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-SCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211223646|gb|FL051776.1|FL051776
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCASCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225707|gb|FL051787.1|FL051787
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211225711|gb|FL051791.1|FL051791
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211221582|gb|FL051758.1|FL051758
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211223634|gb|FL051764.1|FL051764
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211223645|gb|FL051775.1|FL051775
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCA-CCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGGEST: gi|211223638|gb|FL051768.1|FL051768
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
EST: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATG GCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
genomic: GAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatga ... gttggtgcagGCACTGACGGAGCGGCAGCCGCAGCTGGAGAAGAAGCCGACGCGCGGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTCGAAGCACCCTAGTCGTCGTAGCGGCCTACGGGCTCTTGGGCAGAGAGAGAAGCTGCATAGCCTGCATATGCTCCAGCTGCTGCGCGCAATGATGgtgtgtatgatgatatgtcagctacgcaatttggattcctgctagtgcttcgacgaagtgactgacggtgttttccgtgttggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC