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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGCAAGTTTGATCCCAAGCGCCTGGAGAGCTCGGAGCCGGATGATATCCTCAAACCCACCGTGCAGTGTGACGAGATATTCCGGTACAGGAACAAAgtgaggtttaactgtggggtttatggtcggttggttttggcgttttgaatggtaataaagtaataatgttcacgtcatcttgtgttttcgttgttgcag

Basic information

species Zea mays
transcript GRMZM2G115198_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g09750.1 (Oryza sativa), 5'ss of exon 1
CTTTGGCAAGTTTGATCCCAAGCGCCTGGAGAGCTCGGAGCCGGATGATATCCTCAAACCCACCGTGCAGTGTGACGAGATATTCCGGTACAGGAACAAAgtgaggtttaactgtggggtttatggtcggttggttttggcgttttgaatggtaataaagtaataatgttcacgtcatcttgtgttttcgttgttgcag
|||||||||||| ||||||  |    |||||||||||||||| |||| |||| | ||||||| ||||| ||| ||||||||||| |||||||||||||| ||||  ||    ||||||| ||  ||  ||||      || |||||   |||    ||||      ||||    |  |||  ||||| |          
CTTTGGCAAGTTCGATCCCCGGAAGATGGAGAGCTCGGAGCCCGATGCTATCTTGAAACCCATCGTGCCGTGCGACGAGATATTTCGGTACAGGAACAAGgtgaatttctggtgtgggggtttaggagggtttaggagggggtttt---tggcgcaaaagatgagttgtt----ttttctcttgtttccag--------