Sequence
atgc intronic sequence ATGC exonic sequenceGTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgagattactgacctttgtatgtttactaatggcagattccatgtttcaaacattttttttctgttgtaatactgttacctgtgtctgtcctccatttgctgattttgtgcctgtgcctcctttcctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G111477_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 13
GTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgagattactgacctttgtatgtttactaatggcagattccatgtttcaaacattttttttctgttgtaatactgttacctgtgtctgtcctccatttgctgattttgtgcctgtgcctcctttcctag
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----ATTAGATCTGCAATTGAGCTAAGCACTTCTGATTATGACAAGGAAAAGCTACAGGAGCGGTTGGCAAAGCTCTCCGGAGGTGTTGCTGTTCTAAAGgtgaggttcacaatatt---atgtttat--attgaggaatatatattgaatgaaataacaaactttccgaaca---ttccatggttagataaaccatctgaaagagcc----------------------
upper sequence: GRMZM2G111477_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G33680.1 (Glycine max), 5'ss of exon 13
GTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgagattact-gacctttgtatgtttactaatgg--cagattccatgtttcaa-acattttttttctgttgtaatactgttacctgtgtctgtcctccatttgctgattttgtgcctgtgcctcctttcctag
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----ATTAGATCAGCAATTGAAAATAGCACTTCAGATTATGACAAGGAAAAGTTACAGGAAAGATTAGCCAAGCTTTCTGGGGGTGTTGCAGTACTGAAGgtttgtttatttgagtttaccttgcttgctgttaagtcttatctggtgcttcatcatatggttttgtcatgataaaattaacatctgaaaccttact---tttgcag---------------------------
upper sequence: GRMZM2G111477_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA20G33910.1 (Glycine max), 5'ss of exon 13
GTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgagattact-gacctttgtatgtttactaatggcagattccatgtttcaaacattttttttctgttgtaatactgttacctgtgtctg---tcctccatttgctgattttgtgcctgtgcctcctttcctag
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----ATTAGATCAGCAATTGAAAATAGCACTTCAGATTATGACAAGGAAAAGTTACAGGAAAGATTAGCCAAGCTTTCTGGGGGTGTTGCAGTACTGAAGgtttgtttatttgagtttaccttgcttgctattag--gattttatctggcacttcatcctatggttttgtcatgataaaactaacatctgaaacctcacttttgcag---------------------------
upper sequence: GRMZM2G111477_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgag-----attactgacctttgtatgtttactaatggcagattccatgtttcaaacattttttttctgttgtaatactgttacctgtgtctgtcctccatttgctgattttgtgcctgtgcctcctttcctag
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----ATTAGGTCAGCAATTGAACTGAGCACCTCAGATTATGACAAGGAAAAACTGCAAGAAAGGTTGGCTAAGCTCTCTGGAGGTGTTGCAGTGTTGAAGgttagtccatgttataatgttttgggagtcttagaatcatagcagcctggttgtaagtgtcttgttataacttc--tggagctaattgtgtttag----------------------------------------
upper sequence: GRMZM2G111477_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv05s0051g00340.t01 (Vitis vinifera), 5'ss of exon 13
GTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtg-------------agattactgacctttgtatgtttactaatggcagattccatgtttcaaacattttttttctgttgtaatactgttacctgtgtctgtcc---tccatttgctgattttgtgcctgtgcctcctttcctag
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----ATTAGGTCAGCCATTGAATTGAGCACTTCTGATTATGACAAGGAAAAGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGgtctgtatcaatttacaaatccccaacattactgtctaggcttgttg-aggctctaaactcaggagctactgtactggtactcagattcatggggaatgttatctagatatatataaaaatggtggaaaattgcttccctttgcag
upper sequence: GRMZM2G111477_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ32351 (Selaginella moellendorffii), 5'ss of exon 11
GTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgagattactgacctttgtatgtttactaatggcagattccatgtttcaaacattttttttctgttgtaatactgttacctgtgtctgtcctccatttgctgattttgtgcctgtgcctcctttcctag
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----ATCAGAGAAGCTGTGAAGTCTAGCACATCAGACTATGACAAGGAAAAGCTCCAAGAAAGGCTGGCCAAGCTCTCTGGAGGTGTAGCCGTCTTGAAGgtatgtacaccaa-------agactt--ttgtggcag------cgtttttattattgtttcgc-gcgcgagcgtag------------------------------------------------------
upper sequence: GRMZM2G111477_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ20894 (Selaginella moellendorffii), 5'ss of exon 11
GTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgagattactgacctttgtatgtttactaatggcagattccatgtttcaaacattttttttctgttgtaatactgttacctgtgtctgtcctccatttgctgattttgtgcctgtgcctcctttcctag
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----ATCAGAGAAGCTGTGAAGTCTAGCACATCAGACTATGACAAGGAAAAGCTCCAAGAAAGGCTGGCCAAGCTCTCTGGAGGTGTAGCCGTCTTGAAGgtacgtacgccaa-------agactt--ttgtggcag------cgtttttattattgtttcgc-gcgcgagtgtag------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|113703063|gb|EE680567.1|EE680567EST: AGCTCCAGGAGCGGTTGGCAAAGCTCTCTGGAGGTGTTGCTGTTCTGAAG ATTGGAGGAGCCAGCGAAGCAGAAGTTGGTGAGAAGAAGGATAGAGTGACA
genomic: AGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgagattac ... cctttcctagATTGGGGGAGCTAGCGAAGCAGAAGTTGGTGAGAAGAAGGATAGAGTGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGATTAGATCAGCAATTGAGAATAGCACTTCAGATTATGATAAGGAAAAGCTCCAGGAGCGGTTGGCAAAACTCTCTGGAGGTGTTGCTGTTCTGAAGgtgagattactgacctttgtatgtttactaatggcagattccatgtttcaaacattttttttctgttgtaatactgttacctgtgtctgtcctccatttgctgattttgtgcctgtgcctcctttcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG