1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CCGGCAGGCCGTCGGCCGGGCCCGTGTACCGGAGCATCTACGCCAAGGACGGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtcccgttttctagcatgctactagatgctaccatagtacaccctgctttcacaatgtgttttcctttcccattgcatggccagctctcactaac...
species | Zea mays |
transcript | GRMZM2G104847_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|148958443|gb|EC904677.2|EC904677
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|148995832|gb|EE035067.2|EE035067
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211347818|gb|FL132814.1|FL132814
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GCCTCATGGACCTCCCACAGGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211345429|gb|FL132812.1|FL132812
genomic: GCCTCATGGACCTCCCACA-GGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|149076511|gb|EE165137.2|EE165137
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|87157287|gb|DY402076.1|DY402076
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|149086279|gb|EE175820.2|EE175820
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|149107582|gb|EE189463.2|EE189463
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|71430909|gb|DR811959.1|DR811959
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|149073920|gb|EE162247.2|EE162247
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|149098382|gb|EE184358.2|EE184358
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211174083|gb|FL129198.1|FL129198
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211345428|gb|FL132811.1|FL132811
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|148942583|gb|EC887602.2|EC887602
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|9254572|gb|BE345040.1|BE345040
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGGTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|26559314|gb|CA831549.1|CA831549
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211174080|gb|FL129195.1|FL129195
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|93282461|gb|EB674725.1|EB674725
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|149085816|gb|EE175338.2|EE175338
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|148970227|gb|EE021164.2|EE021164
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|148999540|gb|EE036511.2|EE036511
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211347820|gb|FL132816.1|FL132816
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|76283292|gb|DV022860.1|DV022860
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211175751|gb|FL129202.1|FL129202
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211174081|gb|FL129196.1|FL129196
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|211175754|gb|FL129205.1|FL129205
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGTEST: gi|94479494|gb|EB708452.1|EB708452
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
EST: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAG TGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
genomic: GGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtccc ... ggtctcgtagTGGGGCAGTCAAGAAGTACCCCACGAACAGGATGGTCGGGCAGCGTCAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCAGGCCGTCGGCCGGGCCCGTGTACCGGAGCATCTACGCCAAGGACGGCCTCATGGACCTCCCACAGGACATCCAGTCCCCTTGGGACTTGTTCAGgtccggtcccgttttctagcatgctactagatgctaccatagtacaccctgctttcacaatgtgttttcctttcccattgcatggccagctctcactaac
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