1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCGCGCCTTCGGCTCCCTCAGATGCGCGCGAGGATGTGGTAGCCCAGGTCGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaacgcctcctccgcagttagtttaccattccatttgtttgttatgcgttaacttgattgggcgacaaaaatgttagcttagaattcgtgcag...
species | Zea mays |
transcript | GRMZM2G103345_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|149079416|gb|EE168394.2|EE168394
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|149112744|gb|EE295566.2|EE295566
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|91053358|gb|EB163776.1|EB163776
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|211525651|gb|FL218421.1|FL218421
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|211525649|gb|FL218419.1|FL218419
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|18173981|gb|BM349369.1|BM349369
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|148954293|gb|EC899700.2|EC899700
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTAGAAGTTCATTTCATGEST: gi|149059480|gb|EE156965.2|EE156965
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATT-CATG
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|211117939|gb|FL431800.1|FL431800
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|101387725|gb|EB815877.1|EB815877
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTAEST: gi|211525648|gb|FL218418.1|FL218418
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
EST: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTG TGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
genomic: CGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaa ... ctttctgcagTGCTAAGAATGGAGCAAGAAATTTTGAAGTTCATTCATGACCCTAGTCGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCGCCTTCGGCTCCCTCAGATGCGCGCGAGGATGTGGTAGCCCAGGTCGATCAGTTCCTACGAGAGGCCCTCGAGAAGCCAAGGGAGAGGCTTTCTGgtaaaattaacgcctcctccgcagttagtttaccattccatttgtttgttatgcgttaacttgattgggcgacaaaaatgttagcttagaattcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaaa