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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCTGAAGCGGCTGCACCCGCGCCCTCTTGCTGTGTGGCCACTGGCCAAGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCACTTCGAGgtgagcagctttgctgagttgtgaagcttttcatggtgtcttgggatttggcttagtggtgtggtactctgggtaatcgctcgggctcggaggatagggt...

Basic information

species Zea mays
transcript GRMZM2G099328_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76910059|gb|DV163681.1|DV163681
EST:     AGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCACTTCGAG                         GCTAAAGGGATTCTGATCATCACTTAAGCTCAAGATCATGAGTTGGTTAAA
genomic: AGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCACTTCGAGgtgagcagct ... ttggttgcagGCTAAAGGGATTCTGATCATCACTTAAGCTCAAGATCATGAGTTGGTTAAA
EST: gi|149080806|gb|EE169875.2|EE169875
EST:     AGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCACTTCGAG                         GCTAAAGGGATTCTGATCATCACTTAAGCTCAAGATCATGAGTTGGTTAAA
genomic: AGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCACTTCGAGgtgagcagct ... ttggttgcagGCTAAAGGGATTCTGATCATCACTTAAGCTCAAGATCATGAGTTGGTTAAA
EST: gi|71773669|gb|DR971566.1|DR971566
EST:     AGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCACTTCGAGGTCACGAG                  
genomic: AGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCAC-T-----T--CGAGgtgagcagct ... ttg
EST: gi|149012210|gb|EE042508.2|EE042508
EST:     AGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCACTTCGAG                         GCTAAAGGGATTCTGATCATCACTTAAGCTCAAGATCATGAGTTGGTTAAA
genomic: AGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCACTTCGAGgtgagcagct ... ttggttgcagGCTAAAGGGATTCTGATCATCACTTAAGCTCAAGATCATGAGTTGGTTAAA