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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCAGGAAGGAATGGTCTGGATTTGGCCTAGGGATGACCCACCAAAGGCTACAATCCCTTCTCTTCTGCCTCCTTCAGGATTTACAGTTCATGCAGAGgtaaaaggaaatcctgctatgatgcagtggcacaagtgtattgtattgtatttttttgtaacggtgtgttcttctgatcatccaacag

Basic information

species Zea mays
transcript GRMZM2G082527_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082527_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 6
TGAGCAGGAAGGAATGGTCTGGATTTGGCCTAGGGATGACCCACCAAAGGCTACAATCCCTTCTCTTCTGCCTCCTTCAGGATTTACAGTTCATGCAGAGgtaaaaggaaatcctgctatgatgcagtggcacaagtgtattgtattgtatttttttgtaacggtgtgttcttctgatcatccaacag-------------------------
|||||| ||||||||||| ||||| |||||| |  |||||||||| ||| | || ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||| ||  ||| |||||   |   | | | | | | |||   | |   |  |    | ||     ||      |  |                          
TGAGCAAGAAGGAATGGTTTGGATATGGCCTGGCAATGACCCACCGAAGTCGACTATCCCTTCTCTGCTGCCTCCTTCAGGATTTACAATTCACGCAGAGgtaaaaggagatcatgtcatgctgcagcaaccatactatgtggaactgt-cctgtgcatttcaagatttttactggactgaaaagtaatggaattgttcttgatcatcaacag

upper sequence: GRMZM2G082527_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 6
TGAGCAGGAAGGAATGGTCTGGATTTGGCCTAGGGATGACCCACCAAAGGCTACAATCCCTTCTCTTCTGCCTCCTTCAGGATTTACAGTTCATGCAGAGgtaaaaggaaatcctgctatgatgcag----------tggcacaagtgtattgtatt------gtatttttt-------tgtaacggtgtg----ttcttctgatcatccaacag
|||||| ||||| ||||| ||||| |||||| | |||| | ||||  || | || ||||||||||| | ||| ||||||||||||||| ||||||||||||||||| |||||| ||  ||  |||||          |||   ||||||  ||| ||      || ||||||       ||||| |   ||    || |  | |||||| |||||
TGAGCAAGAAGGCATGGTTTGGATCTGGCCTGGTGATGGCACACCGGAGTCGACTATCCCTTCTCTGCAGCCCCCTTCAGGATTTACAATTCATGCAGAGgtaaaacgaaatcatgtcatactgcagcaatcttccatggtgaaagtgtcctgtgtttttcaagttttttttactggactgtaaagtaatggaatttatcttcatcatc-aacag