Sequence
atgc intronic sequence ATGC exonic sequenceCAGCATAAGAACTGGAAGGTGAGGAACGACGCAAACATCGACCTCGCCGCTCTATGCGACTCCATCACCGACCCTAAGGATGCCCGCCTCCGCGAGTTCGgtgagatacctccccctacgcctcccgatccgccccatttcgcgctcggatctgcgctatgctcgattagcgcggtaccgtttggggatttcaaatcatttttgggctcaagatctgaagtctagtgtttttctgttctactccgatggttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g60040.1 (Oryza sativa), 5'ss of exon 1
CAGCATAAGAACTGGAAGGTGAGGAACGACGCAAACATCGACCTCGCCGCTCTATGCGACTCCATCACCGACCCTAAGGATGCCCGCCTCCGCGAGTTCGgtgagatacctccccctacgcctcccgatccgc-cccatttcgcgctcggatctgcgctatgctcgattagcgcggtaccgtttggggat----ttcaaatcatttttgggctcaagatctgaagtctagtgtttttctgttctactccgatggttag
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CAGCACAAGAACTGGAAGGTGCGGAACGACGCCAACATCGATCTCGCCGCCCTCTGCGACTCAATCACCGACCCCAAGGACGCCCGCCTCCGCGAGTTCGgtgagataag-ctcccggtggctcccgatccacgcccattgcgcgctcggatccgcgccctgcttgattctcgctgtttcgtctcgttttttttttcgaggggtgttttagcgttagatctgaaggcc----cttttgtcttttccgccggtggttag
upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g60050.1 (Oryza sativa), 5'ss of exon 1
CAGCATAAGAACTGGAAGGTGAGGAACGACGCAAACATCGACCTCGCCGCTCTATGCGACTCCATCACCGACCCTAAGGATGCCCGCCTCCGCGAGTTCGgtgagatacctccccctacgcctcccgatccgccccatttcgcgctcggatctgcgctatgctcgattagcgcggtaccgtttggggatttcaaatcatttttgggctcaagatctgaagtctagtgtttttctgttctactccgatggttag
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CGGCACAAGAGCTGGAAGGTGCGGCGCGACGCCAACGTCGACCTCGCCGCCCTCTGCGACTCCATCGCCGACCCCAAGGACGCCCGCCTCCGCGAGTTCGgtcag-----tttagttacactctcccagcgtctcc----------cgaatct------tgcgcgatcggatccgcgtcgtctga--actctgaaatgcattctaatttgccttttcttttct----ttttttttttttgcgccggtggttag
upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G35140.1 (Glycine max), 5'ss of exon 1
CAGCATAAGAACTGGAAGGTGAGGAACGACGCAAACATCGACCTCGCCGCTCTATGCGACTCCATCACCGACCCTAAGGATGCCCGCCTCCGCGAGTTCGgtgagatacctccccctacgcctcccgatccgccccatttcgcgctcggatctgcgctatgctcgattagcgcggtaccgtttggggatttcaaatcatttttgggctcaagatctgaagtctagtgtttttctgttctactccgatggttag
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---------AATTGGAAGGTGCGCAACGAGGCGAACATCGATTTGGCCTCGCTCTGCGACTCCATCACCGATCCCAAGGACTCCCGCATCCGCGAATTCGgtc-ggtgtttttttcttcttcgcctag-----------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71441120|gb|DR822170.1|DR822170EST: TCTATGCGACTCCATCACCGACCCTAAGGATGCCCGCCTCCGCGAGTTCG GGCCGTTGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGA
genomic: TCTATGCGACTCCATCACCGACCCTAAGGATGCCCGCCTCCGCGAGTTCGgtgagatacc ... cgatggttagGGCCGTTGTTTAGGAAGACGGTTGCAGATTCCAATGCGCCGGTACAGGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCATAAGAACTGGAAGGTGAGGAACGACGCAAACATCGACCTCGCCGCTCTATGCGACTCCATCACCGACCCTAAGGATGCCCGCCTCCGCGAGTTCGgtgagatacctccccctacgcctcccgatccgccccatttcgcgctcggatctgcgctatgctcgattagcgcggtaccgtttggggatttcaaatcatttttgggctcaagatctgaagtctagtgtttttctgttctactccgatggttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG