1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCCCTTCGTCGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccgctgctttcccacagcacccccaccgccgatccggtttgtcgcttgtagtagtctgccgatctggcttgttgcttgtcgtagtttcgtttg...
species | Zea mays |
transcript | GRMZM2G067476_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|17932024|gb|BM268984.1|BM268984
genomic: CCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: ACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|148973350|gb|EE024440.2|EE024440
genomic: ACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|60400336|gb|DN233143.1|DN233143
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18168234|gb|BM338074.1|BM338074
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GCGTCGAGCGCGTCGCTGTCTCCCTCGACCTATACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|50331163|gb|CO526289.1|CO526289
genomic: GCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18649161|gb|BM497980.1|BM497980
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|22819811|gb|BU499901.1|BU499901
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18161892|gb|BM331731.1|BM331731
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|89249775|gb|DY621561.1|DY621561
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|16378806|gb|BI992621.1|BI992621
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: CAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18168815|gb|BM338655.1|BM338655
genomic: CAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: CCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18168659|gb|BM338499.1|BM338499
genomic: CCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: ACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18649160|gb|BM497979.1|BM497979
genomic: ACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18167604|gb|BM337444.1|BM337444
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18174386|gb|BM349774.1|BM349774
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: AGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18164000|gb|BM333839.1|BM333839
genomic: AGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: CCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18174175|gb|BM349563.1|BM349563
genomic: CCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GCGCGTCGCTGTCT-CCTCGAACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18173140|gb|BM348528.1|BM348528
genomic: GCGCGTCGCTGTCTCCCTCG-ACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|18172051|gb|BM347439.1|BM347439
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|110524573|gb|EE028757.1|EE028757
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: ACCAGGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTEST: gi|37391749|gb|CF633118.1|CF633118
genomic: ACCA-GGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGT
EST: CCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTAEST: gi|18163404|gb|BM333243.1|BM333243
genomic: CCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GACCTCTACAACCAGGGATCCGC GACTGCATATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|161590160|gb|EY960637.1|EY960637
genomic: GACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACA
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCCTTCGTCGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccgctgctttcccacagcacccccaccgccgatccggtttgtcgcttgtagtagtctgccgatctggcttgttgcttgtcgtagtttcgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc