1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGCGCTGGCCGTCGCGGCGGCGGCCATGGTGTTGGTCTGGGCCATCTACTTCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtactactgcctctcccctccccgcgctggttgcttcaacgccgacaacttgttttggggacgcgtgttttcccttttgtttgctttctttcccct...
species | Zea mays |
transcript | GRMZM2G066885_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGEST: gi|211288139|gb|FL278508.1|FL278508
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGEST: gi|211055163|gb|FK977534.1|FK977534
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGEST: gi|148965066|gb|EC906072.2|EC906072
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGEST: gi|50323144|gb|CO518270.1|CO518270
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGEST: gi|211055161|gb|FK977532.1|FK977532
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGEST: gi|211288138|gb|FL278507.1|FL278507
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGEST: gi|148946110|gb|EC891404.2|EC891404
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGEST: gi|76287729|gb|DV027297.1|DV027297
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCTGGCCGTCGCGGCGGCGGCCATGGTGTTGGTCTGGGCCATCTACTTCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtactactgcctctcccctccccgcgctggttgcttcaacgccgacaacttgttttggggacgcgtgttttcccttttgtttgctttctttcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC