1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCGGACGCCCGTGGACATCGTGCGGCAGACGCGCGAGTGCCTCGTCTACCTCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgggtctgcccctatgtctagggatttggtggcctcgattccccatttgcccgctggttcgaccctgattgcgcgtgaatgtgggctgaactt...
species | Zea mays |
transcript | GRMZM2G066051_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|148999214|gb|EE036133.2|EE036133
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|78107219|gb|DV525637.1|DV525637
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|149072876|gb|EE161132.2|EE161132
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|149104773|gb|EE290233.2|EE290233
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|6194845|gb|AW146949.1|AW146949
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|149084269|gb|EE173698.2|EE173698
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|71447694|gb|DR828744.1|DR828744
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|148955827|gb|EC901514.2|EC901514
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|71328881|gb|DR801123.1|DR801123
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGC-AAAATATCGGGGATATGAAGTCTATCCTTTACGGCEST: gi|31354689|gb|CD439046.1|CD439046
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|60340162|gb|DN207135.1|DN207135
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|32856027|gb|CD995708.1|CD995708
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|149082296|gb|EE171481.2|EE171481
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|6994177|gb|AW453391.1|AW453391
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: CTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|6022524|gb|AW067557.1|AW067557
genomic: CTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|6194848|gb|AW146952.1|AW146952
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: ACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|71447693|gb|DR828743.1|DR828743
genomic: ACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACCGAGCTAAGCCAAAATATCTGGGATATGAAGTCTATCCCTTTACGGEST: gi|149079796|gb|EE168794.2|EE168794
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCC-TTTACGG
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGCEST: gi|149013854|gb|EE043335.2|EE043335
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAG ATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
genomic: TCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgg ... gtttatgcagATGACAGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGACGCCCGTGGACATCGTGCGGCAGACGCGCGAGTGCCTCGTCTACCTCGACCTCCACTCGGACTCCAGGAGCGGCGATGCCAAGCGCGAGGAGAAGgtgagatcgggtctgcccctatgtctagggatttggtggcctcgattccccatttgcccgctggttcgaccctgattgcgcgtgaatgtgggctgaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcccc