Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACTGGCCGTCGCGGCGGCGGCCATGGTTCTCGTCTGGTCCATCCAGTTCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactctgcctcagtgtgcctctcccctccccgtgctgtgctgcccgattggataaggcgctggctgcttcgacgccgacaaatttttttttcttt...

Basic information

species Zea mays
transcript GRMZM2G060357_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060357_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g42890.1 (Oryza sativa), 5'ss of exon 1
CGCACTGGCCGTCGCGGCGGCGGCCATGGTTCTCGTCTGGTCCATCCAGTTCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactctgcctcagtgtgcctctcccctccccgtgctgtgctgcc--cgattggataaggcgctggctgcttcgacgccgacaaatttttttttcttt-
||| |||||||| ||||| ||  ||||||| || ||||||| |||||| |||||||| || |||||| ||||| |||| ||||||||||||||||||||||||||||||        || |||| | |  ||| |   | | |  | |    |||    |   | | |    | || || |  ||||| |||   |  |  | 
CGCGCTGGCCGTGGCGGCCGCCACCATGGTGCTGGTCTGGTGCATCCACTTCCGCGGCGGCCTCGCCTTCGAGGCCACAAACAAGAACCTCATCTTCAACgtgagtacttgattctcgtctgccccccgtctctcta-gttatctttctagtgataccgtcccgagatattggattggatg--gacaattttgggtgccgctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78180333|gb|DV550706.1|DV550706
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|8577184|gb|BE129821.1|BE129821
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|148938242|gb|EC882533.2|EC882533
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211354978|gb|FL245103.1|FL245103
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|60354340|gb|DN221313.1|DN221313
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211275486|gb|FL301567.1|FL301567
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211273679|gb|FL301561.1|FL301561
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|32866290|gb|CF005972.1|CF005972
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211273672|gb|FL301554.1|FL301554
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211275485|gb|FL301566.1|FL301566
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211273675|gb|FL301557.1|FL301557
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211273682|gb|FL301564.1|FL301564
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|28187673|gb|CB179283.1|CB179283
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|32865638|gb|CF005320.1|CF005320
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|149009145|gb|EE041281.2|EE041281
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211273676|gb|FL301558.1|FL301558
EST:     TCCGCGGCGGGCTCG-CATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211352577|gb|FL245095.1|FL245095
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|1366564|gb|W59826.1|W59826
EST:     AAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: AAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211354976|gb|FL245101.1|FL245101
EST:     TCCGCGGCGGGCTCG-CATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|148959552|gb|EC905522.2|EC905522
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|148941514|gb|EC886445.2|EC886445
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211352579|gb|FL245097.1|FL245097
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211275490|gb|FL301571.1|FL301571
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|50323464|gb|CO518590.1|CO518590
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211352575|gb|FL245093.1|FL245093
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211273673|gb|FL301555.1|FL301555
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211275484|gb|FL301565.1|FL301565
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|149106897|gb|EE188797.2|EE188797
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|71436474|gb|DR817524.1|DR817524
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211273674|gb|FL301556.1|FL301556
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|22472656|gb|BU037136.1|BU037136
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|149080500|gb|EE169531.2|EE169531
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|12047248|gb|BF729387.1|BF729387
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|148994879|gb|EE034279.2|EE034279
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|87156548|gb|DY401337.1|DY401337
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211354977|gb|FL245102.1|FL245102
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211352580|gb|FL245098.1|FL245098
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|148957898|gb|EC904053.2|EC904053
EST:     TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211275489|gb|FL301570.1|FL301570
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: gi|211352576|gb|FL245094.1|FL245094
EST:     TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 47

CGCACTGGCCGTCGCGGCGGCGGCCATGGTTCTCGTCTGGTCCATCCAGTTCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 205

CGCACTGGCCGTCGCGGCGGCGGCCATGGTTCTCGTCTGGTCCATCCAGTTCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 217

CGCACTGGCCGTCGCGGCGGCGGCCATGGTTCTCGTCTGGTCCATCCAGTTCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 216

CGCACTGGCCGTCGCGGCGGCGGCCATGGTTCTCGTCTGGTCCATCCAGTTCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCACTGGCCGTCGCGGCGGCGGCCATGGTTCTCGTCTGGTCCATCCAGTTCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactctgcctcagtgtgcctctcccctccccgtgctgtgctgcccgattggataaggcgctggctgcttcgacgccgacaaatttttttttcttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc