1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGAGGAGGTTCGGAAGGTCAGGAAGCCGTACACCATCACCAAGTCGCGGGAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccccgaccccctctgcgctccccccctgtccccgattcgggagtaggtagtgccgtttcgatgagtgaagtagcggttacttgctctgttgcc...
species | Zea mays |
transcript | GRMZM2G057408_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|101392321|gb|EB818090.1|EB818090
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211503271|gb|FL119712.1|FL119712
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|91876492|gb|EB406449.1|EB406449
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211500941|gb|FL119710.1|FL119710
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211503273|gb|FL119714.1|FL119714
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|50336085|gb|CO531211.1|CO531211
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTT-GATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211503279|gb|FL119720.1|FL119720
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211503277|gb|FL119718.1|FL119718
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|89755460|gb|DY685870.1|DY685870
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|78118283|gb|DV536669.1|DV536669
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|89757689|gb|DY687184.1|DY687184
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|78076508|gb|DV504942.1|DV504942
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211503280|gb|FL119721.1|FL119721
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211500936|gb|FL119705.1|FL119705
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|148963456|gb|EE014475.2|EE014475
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: AGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCACAGACTGTEST: gi|148956892|gb|EC902815.2|EC902815
genomic: AGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGG-CCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|71441161|gb|DR822211.1|DR822211
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGATGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|71428977|gb|DR810027.1|DR810027
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211503278|gb|FL119719.1|FL119719
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211500940|gb|FL119709.1|FL119709
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGTEST: gi|211500939|gb|FL119708.1|FL119708
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
EST: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCT TTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
genomic: GAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccc ... tttgttgtagTTTTGATCGTGATTGGAAGAAAATTGAAGCATATGTTGGCTCAAAGACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGGAGGTTCGGAAGGTCAGGAAGCCGTACACCATCACCAAGTCGCGGGAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccccgaccccctctgcgctccccccctgtccccgattcgggagtaggtagtgccgtttcgatgagtgaagtagcggttacttgctctgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT