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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCCCGCCGCCTCCAGATCACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaactcgcatccgatttccccaatactttcttcgattctttcctgttcctcaccttggttcgatctgccacgccggtgcag

Basic information

species Zea mays
transcript GRMZM2G052713_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344147|gb|FL188317.1|FL188317
EST:     GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344138|gb|FL188308.1|FL188308
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211341751|gb|FL188301.1|FL188301
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211341749|gb|FL188299.1|FL188299
EST:     GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG