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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAGCTCGCGGGAGAGCACCGTGGCGGCGGCGCGCGGCATAGTCGACTCCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgcttccggacctcggttggagtatttgttggaatggatcgcagcttgcgcttttgtttgtgccatgaagatgatgaattaaagctatgtttg...

Basic information

species Zea mays
transcript GRMZM2G048740_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048740_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g04140.1 (Oryza sativa), 5'ss of exon 1
GGGGAGCTCGCGGGAGAGCACCGTGGCGGCGGCGCGCGGCATAGTCGACTCCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgcttccggacctcggttggagtatttgttggaatggatcgcagcttgcgcttttgtttgtgccatgaagatgatgaattaaagctatgtttg---
||||||||||||||  ||| |||  ||||||||||| |||||||||||| || ||| ||||||||||||||  ||||||||| ||||||||||||||||||||||||  ||  ||         | | | |||  | |||     ||     ||   ||| || ||    |  |    |  ||       || |         
GGGGAGCTCGCGGGCCAGCTCCGCCGCGGCGGCGCGGGGCATAGTCGACGCCGCCGGGGACCCCATATGGGAGGCCGTCAAGTCGGAGGCCAAGTCTGAGgtgagtactctcacgagatcgctctcgcggattgatcggacc---tcttcttttatccttctgatttgatcgcggcttttctgctactgtgccagacagactc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76291950|gb|DV031518.1|DV031518
EST:     CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAG                         GCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
genomic: CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgc ... tgctccacagGCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
EST: gi|71320313|gb|DR796903.1|DR796903
EST:     CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAG                         GCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
genomic: CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgc ... tgctccacagGCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
EST: gi|149108314|gb|EE292652.2|EE292652
EST:     CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAG                         GCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
genomic: CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgc ... tgctccacagGCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
EST: gi|149078416|gb|EE167191.2|EE167191
EST:     CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAG                         GCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
genomic: CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgc ... tgctccacagGCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
EST: gi|93012509|gb|EB638029.1|EB638029
EST:     CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAG                         GCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
genomic: CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgc ... tgctccacagGCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
EST: gi|71434262|gb|DR815312.1|DR815312
EST:     CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAG                         GCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
genomic: CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgc ... tgctccacagGCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
EST: gi|211068411|gb|FL280203.1|FL280203
EST:     CCCCCGAGGACCC-ATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAG                         GCAGAAAAGGAACCTATTTTGAGTAGCTTCTT
genomic: CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgc ... tgctccacagGCAGAAAAGGAACCTATTTTGAGTAGCTTCTT
EST: gi|71771744|gb|DR969681.1|DR969681
EST:     CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAG                         GCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT
genomic: CCCCCGAGGACCCCATATGGGTTGCCGTCAAGGCGGAGGCCAAGTCTGAGgtgagtatgc ... tgctccacagGCAGAAAAGGAACCTATTTTGAGTAGCTTCTTGTATGCCAGTGTGCTGTCT