1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGCGGGGACCCAGGAGGGCCGGGCTGGCCGTCACGGCGGCGGCTGCCGCCGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcctgaagttccgctcatttggcatttctcatccgtagtcaaagctctcggcttttggctgttgatagagcggttcacattgttcatgattcatgtcaacgtttgcaaaaaaccaattttcatcatttgtggtaatccag
species | Zea mays |
transcript | GRMZM2G047219_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGACAGGGAAGGACAGTTTGTGGGACEST: gi|211142589|gb|FL359509.1|FL359509
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|211395952|gb|FL307387.1|FL307387
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|211529297|gb|FL356731.1|FL356731
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|149015400|gb|EE045246.2|EE045246
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|13490392|gb|BG517156.1|BG517156
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAEST: gi|74243388|gb|DT651302.1|DT651302
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACA
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|148966374|gb|EE017368.2|EE017368
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|13198604|gb|BG354406.1|BG354406
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|148996959|gb|EE035773.2|EE035773
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|211026165|gb|FL334138.1|FL334138
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|148935909|gb|EC879959.2|EC879959
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|76293497|gb|DV033065.1|DV033065
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|211254886|gb|FL311677.1|FL311677
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|211394348|gb|FL351051.1|FL351051
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|89251955|gb|DY623741.1|DY623741
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|211200628|gb|FL339642.1|FL339642
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|89762676|gb|DY690164.1|DY690164
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|71774203|gb|DR972081.1|DR972081
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|211267296|gb|FL319984.1|FL319984
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGACEST: gi|91055640|gb|EB166058.1|EB166058
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
EST: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAG GCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
genomic: CGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcc ... ggtaatccagGCCAAATTGTGTACAAGAAGTTGAAGGAGAGGGAAGGACAGTTTGTGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCGGGGACCCAGGAGGGCCGGGCTGGCCGTCACGGCGGCGGCTGCCGCCGGTGGATCGCCGCGCACTGTGCTCGTCACCGGCGCGGGCGGCCGAACAGgtaggtttcctgaagttccgctcatttggcatttctcatccgtagtcaaagctctcggcttttggctgttgatagagcggttcacattgttcatgattcatgtcaacgtttgcaaaaaaccaattttcatcatttgtggtaatccag
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