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TACTTCTCGGTCACCTCGTCGGGGCTCTCGGAGGTGGACTACCTAGGGGAAAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctctaggtctccttattctcgagttcatgcgggtaatcgatgttgattcgtgggtgatactacactattgcgcaaatttatgaagtatacaattg...
species | Zea mays |
transcript | GRMZM2G044819_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|149071776|gb|EE160171.2|EE160171
genomic: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|148931443|gb|EC874416.2|EC874416
genomic: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|211437118|gb|FL188840.1|FL188840
genomic: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|211437123|gb|FL188845.1|FL188845
genomic: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|71446139|gb|DR827189.1|DR827189
genomic: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|211437116|gb|FL188838.1|FL188838
genomic: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AGCACCAGGGGGGATTTGAACGTGTAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|148967093|gb|EE018263.2|EE018263
genomic: AGCACCAGGGGGGATTTGAACGTG-AGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|211437120|gb|FL188842.1|FL188842
genomic: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AGCACCAGGGGGGATTTGAACGTGNAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAGEST: gi|211437117|gb|FL188839.1|FL188839
genomic: AGCACCAGGGGGGATTTGAACGTG-AGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
EST: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTG GGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
genomic: AAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctcta ... ttaactttagGGAACAGCAAGTCAACTTTGCATGGTCCTATTGAGGAGATAGCTTGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTCTCGGTCACCTCGTCGGGGCTCTCGGAGGTGGACTACCTAGGGGAAAGCACCAGGGGGGATTTGAACGTGAGGAGGGAGCGCCTCGAGGCGCTTGgtgagctctaggtctccttattctcgagttcatgcgggtaatcgatgttgattcgtgggtgatactacactattgcgcaaatttatgaagtatacaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG