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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtcttctttttttgtttcaattcaatttccagagatggccatgtatgtagttatatatatattc...

Basic information

species Zea mays
transcript GRMZM2G040033_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040033_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g01410.1 (Oryza sativa), 5'ss of exon 1
CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtcttctttttttgtttcaattcaatttccagagatggccatgtatgt--agttatatatatattc
|||||||||  |||  ||||||||||| || || || || |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||    ||  |   |  ||||  |    |  |  ||  |           | ||||   ||||     |  |  | | | |   ||  |  | ||  ||
CAAGATGGGAGACGTTGCCACCATCCGAGCCGTTCTGGCGATCCTCCAATGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAATGGATCTTCCAGgttccaattcttcca--taatcttcctctccttttcttcccccccccccccccctattcttcttccgttacttcctttttcttttctgtccttgagatgatc

upper sequence: GRMZM2G040033_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G42900.2 (Glycine max), 5'ss of exon 1
-CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtcttctttttttgtttcaattcaatt----tccagagatggccatgtatgtagttatatatatattc
    | |    |  || ||    ||| |  |  |  |  ||||||| ||||||||||  ||||| ||||| ||||||||| |||||||||||||||| ||||| ||  |  || | |||  ||||  |  | |     | | |      |    ||||||  ||    ||    |||   |  |  | |  || | | ||  |  
CTTCGTTTTCCAGTGGAGC-GTTATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCCTTCAATGTCACTGTCATCATCGTCAACAAGTGGATCTTTCAGgttcctgctatctc-cttcttcttcatctattttcaatttccaaacact-caccaattcgcttcttgtcttctgattctcgagattttttttctgtttacgt--

upper sequence: GRMZM2G040033_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 1
-CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtcttctttttt-tgtttcaattcaatttccagagatggccatgtatgt---agttatatatatattc
      | |  || || ||     |  |  |  |  | || || || || |||||||  ||||| ||||| ||||| ||||||||||||||||||||||||||  |   | | |   || || ||    || || |    |  || ||     ||   |    ||||          | ||| |||   |  |   |  ||| | 
GGTTATTTGCCAATGGAGC-GTGTTTAGATCTCTCTTGGCAATACTTCAATGGTGGGCTTTCAATGTCACTGTCATTATCATCAACAAGTGGATCTTCCAGgtttc--tctttgttatttct-ttacccaattcttataataattattcacacttttttatggtttcttcctcccctcttgtttgttccaaattccttcataat-

upper sequence: GRMZM2G040033_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G11850.1 (Glycine max), 5'ss of exon 1
-CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtcttctttttttg-tttcaattcaatttccagagatggccatgtatgtagttatatat-atattc---
    | |    |  || ||   |||| |  |  |  |  ||||||| ||||||||||  ||||| ||||||||||||||| |||||||||||||||||||||| ||     || |  ||   ||| |     ||||   ||||| ||||   |||| |   |||  |||    | ||| | | | |  | ||     | |||    
CTTCGTTTTCCAGTGGAGC-GTCATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCGTTCAATGTCACCGTCATCATCGTCAACAAGTGGATCTTCCAGgttcctgttttctc-tttctccttctcctcctcct--ccttctattttcaatttcgaaataatcaccaat--tcgccttttgttttctaattcgcgagatttgtt

upper sequence: GRMZM2G040033_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA14G23570.1 (Glycine max), 5'ss of exon 1
CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtcttctt----tttttgtttcaattcaatttccagagatggccatgtatgtagttatatatatattc
    ||  |  |  |   |    |  |  |  |  | || ||||| ||||||||||  ||||| ||||| ||||| ||||||||||||||||||||||||||  | || ||| | || | | || | |  | ||   |||| ||    || |  |    |||||   |      || ||    |    |    |  | | ||| 
GGTTATTTGCCAGTGGAGCGTGTTTAGATCTCTCTTGGCTATCCTTCAGTGGTGGGCTTTCAATGTCACTGTCATTATCATCAACAAGTGGATCTTCCAGgtttc-tctctctctctcgttatt-tctttacccaattcttgttataattataataattattcacactttttttattgcttctttcaaatcccttcaca-att-

upper sequence: GRMZM2G040033_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT1G77610.1 (Arabidopsis thaliana), 5'ss of exon 1
CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtc-----cctcgcgctt---gctcttgtttaaatcctggtcttctttttttgtttcaattcaatttccagagatggccatgtatgtagttatatatatattc---------------------------------------------
 |  |||| | | ||    |   || |  |  |  | || || || ||||||||||| ||||| || |||||||||||||| ||||| |||||||| |||||  | ||     ||| |   ||   | | ||  |||| |     |  |    ||||| |   ||  | |   | ||  | ||    |  | | ||   |  |  ||                                              
AATCATGGAGGAAGGAAGTATGTTCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATCATCATGAACAAATGGATCTTTCAGgtttcttcttaaccctagaatttttaggttttacttaattgtatttaatacccttttgatctgatctattgatctgatgttgctgatttggaatttggtttcagctttatagattggtgataaagttttgatttttttttgttgttgttgcag

upper sequence: GRMZM2G040033_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
-CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtctt----ctttttttgtttcaattcaatttccagagatggccatgtatgtagttatatatatattc
 |    | |  |  || ||  |  |  |  |  |||| |||||||| || |||||||| ||||| |||||||| || ||||| |||||||||||||| |||||   |      ||  ||    || |  ||  ||   ||||    ||||| | |  |  |||  ||||||  |  |     |   | |  || |  || |    
TCTTCTTTGCCAGTGGAGC-GCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgttt-gctttctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211165149|gb|FL094877.1|FL094877
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148942325|gb|EC887343.2|EC887343
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148931400|gb|EC874333.2|EC874333
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148956986|gb|EC902932.2|EC902932
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166810|gb|FL094889.1|FL094889
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|76915429|gb|DV165982.1|DV165982
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148999887|gb|EE036926.2|EE036926
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|71435260|gb|DR816310.1|DR816310
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|149013855|gb|EE043336.2|EE043336
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|149073376|gb|EE161679.2|EE161679
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211083413|gb|FL094868.1|FL094868
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTSGAGTTCAAGTTCCCCCTGACAGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211083408|gb|FL094863.1|FL094863
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|149014118|gb|EE043657.2|EE043657
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211083412|gb|FL094867.1|FL094867
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165143|gb|FL094871.1|FL094871
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165145|gb|FL094873.1|FL094873
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165151|gb|FL094879.1|FL094879
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165146|gb|FL094874.1|FL094874
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166805|gb|FL094884.1|FL094884
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211083404|gb|FL094859.1|FL094859
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|149082107|gb|EE171286.2|EE171286
EST:     GGTGGGGATTCCACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGGAGTTCAAGTTCCCCC
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGG-AGTTCAAGTTCCCCC
EST: gi|149078069|gb|EE166813.2|EE166813
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166811|gb|FL094890.1|FL094890
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|71767509|gb|DR965446.1|DR965446
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166808|gb|FL094887.1|FL094887
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166815|gb|FL094894.1|FL094894
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCMCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165155|gb|FL094883.1|FL094883
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|149090007|gb|EE179298.2|EE179298
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|149113226|gb|EE289757.2|EE289757
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148965335|gb|EE016136.2|EE016136
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148991525|gb|EE033047.2|EE033047
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165147|gb|FL094875.1|FL094875
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211083405|gb|FL094860.1|FL094860
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166809|gb|FL094888.1|FL094888
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTC
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTC
EST: gi|211083406|gb|FL094861.1|FL094861
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCCACTTCATATG
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCC-ACTTCATATG
EST: gi|211165153|gb|FL094881.1|FL094881
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|71419461|gb|DR804780.1|DR804780
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166814|gb|FL094893.1|FL094893
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTT
EST: gi|148972625|gb|EE023585.2|EE023585
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148952770|gb|EC898755.2|EC898755
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165142|gb|FL094870.1|FL094870
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211083410|gb|FL094865.1|FL094865
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148931656|gb|EC874816.2|EC874816
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166816|gb|FL094895.1|FL094895
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148931913|gb|EC875120.2|EC875120
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211083409|gb|FL094864.1|FL094864
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACAGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|78108538|gb|DV526956.1|DV526956
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211166812|gb|FL094891.1|FL094891
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165152|gb|FL094880.1|FL094880
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|211165148|gb|FL094876.1|FL094876
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCCTGACGGTGTCGTGCGTCCACTTCATATGT
EST: gi|148972818|gb|EE023805.2|EE023805
EST:     GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAG                         AAACTGGAGTTCAAGTTCCCCCCTGACGGTGTCGTGCGTCCACTTCATATG
genomic: GGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccc ... gggttgtcagAAACTGGAGTTCAAGTTCCCCC-TGACGGTGTCGTGCGTCCACTTCATATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtcttctttttttgtttcaattcaatttccagagatggccatgtatgtagttatatatatattc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcgc