Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211531971|gb|FL228670.1|FL228670EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTAGACCTGACCTGCCAGGCC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
EST:
gi|211531964|gb|FL228663.1|FL228663EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTAC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTAC
EST:
gi|211528968|gb|FL228657.1|FL228657EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
EST:
gi|211540989|gb|FL228708.1|FL228708EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTA
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTA
EST:
gi|211359203|gb|FL433599.1|FL433599EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTMCCTGGAGATCAATGGGCTGCTAGACCTGACCTGCCAGGCC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
EST:
gi|211540986|gb|FL228705.1|FL228705EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATTCAATGGGCTGCTGGACCTGACCTGCCAGG
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGAT-CAATGGGCTGCTGGACCTGACCTGCCAGG
EST:
gi|211537976|gb|FL228694.1|FL228694EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTAGACCTGAACCTGCCAGGC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGA-CCTGCCAGGC
EST:
gi|211230724|gb|FL437687.1|FL437687EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
EST:
gi|211528961|gb|FL228650.1|FL228650EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
EST:
gi|51871192|gb|CV126076.1|CV126076EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
EST:
gi|84980315|gb|DW530664.1|DW530664EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
EST:
gi|84980304|gb|DW530653.1|DW530653EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCC
EST:
gi|211531963|gb|FL228662.1|FL228662EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGA
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGA
EST:
gi|211540994|gb|FL228713.1|FL228713EST: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAG GCTGCAGACTACCTGGAGATCAATGGGCTGCT
genomic: ATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 3 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
36 (downstream exon)
Score:
24GCCAAGTGCTGCGAGTAACAAGGCCTCAGCGGACGATCTCAAGTCCTTTGATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCCGTCGCGGACATGATCAAGGGGAAGACTCCAGAGGAGATACGCGAGACAT
Block sizes:
49 (upstream exon),
41 (downstream exon)
Score:
26GCCAAGTGCTGCGAGTAACAAGGCCTCAGCGGACGATCTCAAGTCCTTTGATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCCGTCGCGGACATGATCAAGGGGAAGACTCCAGAGGAGATACGCGAGACAT
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
208GCCAAGTGCTGCGAGTAACAAGGCCTCAGCGGACGATCTCAAGTCCTTTGATGCTGAGTTCGTCGATGTTGACCTGGTCACCCTCTTGGAGCTCATTAAGgtgaggccct ... gcattcacagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCCGTCGCGGACATGATCAAGGGGAAGACTCCAGAGGAGATACGCGAGACAT