Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211540885|gb|FL340418.1|FL340418EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|60342385|gb|DN209358.1|DN209358EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211258266|gb|FL355090.1|FL355090EST: CGCAGAGAACATCAAGGCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211472959|gb|FL343113.1|FL343113EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|148964652|gb|EC905936.2|EC905936EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211020747|gb|FL319293.1|FL319293EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211224416|gb|FL320295.1|FL320295EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211306570|gb|FL359156.1|FL359156EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGT
EST:
gi|211090659|gb|FL308854.1|FL308854EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211008014|gb|FL361157.1|FL361157EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|94476128|gb|EB705086.1|EB705086EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211015163|gb|FL318463.1|FL318463EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211377472|gb|FL308237.1|FL308237EST: CGCAGAGAACATCAAGCCGCGCG-CATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211500943|gb|FL349211.1|FL349211EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211374882|gb|FL313293.1|FL313293EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCAC-AATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211375800|gb|FL346981.1|FL346981EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGA
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGA
EST:
gi|94476127|gb|EB705085.1|EB705085EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|211118163|gb|FL349422.1|FL349422EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
EST:
gi|14529472|gb|BI096605.1|BI096605EST: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTG GGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGGT
genomic: CGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
43 (downstream exon)
Score:
43CTCACGGGCTCCACCGAAGTCGGGGACGTCGTCGCCGTCTGCCGATGGGTCGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTTACGTTAGCATCGGGTACCCCTTTGGTCTGATGGCCTCAGTCCTATTCGG
Block sizes:
48 (upstream exon),
42 (downstream exon)
Score:
57CTCACGGGCTCCACCGAAGTCGGGGACGTCGTCGCCGTCTGCCGATGGGTCGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTTACGTTAGCATCGGGTACCCCTTTGGTCTGATGGCCTCAGTCCTATTCGG
Block sizes:
49 (upstream exon),
47 (downstream exon)
Score:
27CTCACGGGCTCCACCGAAGTCGGGGACGTCGTCGCCGTCTGCCGATGGGTCGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTTACGTTAGCATCGGGTACCCCTTTGGTCTGATGGCCTCAGTCCTATTCGG
Block sizes:
48 (upstream exon),
48 (downstream exon)
Score:
53CTCACGGGCTCCACCGAAGTCGGGGACGTCGTCGCCGTCTGCCGATGGGTCGCAGAGAACATCAAGCCGCGCGGCATCCTCCTCGTCGGATCCTCAGCTGgtagactcca ... cttgatgcagGGGCACCAATTGCCGGATCTGCAGTTGATAAAGTGGATGAAGTGATTGGTTACGTTAGCATCGGGTACCCCTTTGGTCTGATGGCCTCAGTCCTATTCGG