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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcagttatatatgtgttttactcgtttttgcatcccttttcagatactggaaaatccactgtgatatacgcttctgttgctttttgttccacgacagataactgacataatttaacctcgataaag

Basic information

species Zea mays
transcript GRMZM2G020210_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020210_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g52479.3 (Oryza sativa), 5'ss of exon 4
TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcagttatatatgtgttttactcgtttttgcatccctt------ttcagat-actggaaaatcc---actgtgatatac-gcttctgttgctttttgttccacgacagataactgacataatttaacctcgataaag
 |||| ||||||||| |||| ||||| ||||| |||||||||||||| || || || ||||| ||||||||| ||||||| ||||  ||||||||| ||||||     |||||| |   |||| ||  ||   | ||    |  |      || | ||      | ||  | ||| ||   |     |||    | ||  |  |||||    ||||| ||||  ||| |   |||||| |||||  |  | ||||||
AGTGATCATGGCCCTGAAAACTGGACTAGTGGGGTTGATCTTGGCCGTCTACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAGgttgattcttttccctctattcatttgcattcatcttcagatattccagaaatacgttggactatccaatttacttgatgttttcatactactttgtattgaatctgtacacttttgctccattacaaa--gctgacagaatttgcctactataaag

upper sequence: GRMZM2G020210_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 4
TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcagttatatatgtgttttactcgtttttgcatcccttttcagatactggaaaatccactgtgatatacgcttctgttgctttttgttccacgacagataactgacataatttaacctcgataaag
  ||  ||   |||  |||||||||| |||||||||||||||||||| ||||| ||||  |||||||||||||| || | ||| |  ||| ||||| |||||| |  |         | |||||||||  ||       | ||   | | ||   || | ||  || ||| |     |    | |  |   ||  ||   || ||||| ||| |                                
GTTGGTCAACCCCCAGAAAATTGGACAAGTGGAGTTGATCTTGGCCGACTTCTTGATCTCCTTGAACTTGATCTCATTACAACAAATGAAGCACTCCAAGgtttgcaa--------acattcagttattaata------attcaaatattcaattctct-caattaatggcattattaaaaggctgcagtatttagtgttttattgtttcacaat-------------------------------

upper sequence: GRMZM2G020210_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G34800.1 (Glycine max), 5'ss of exon 5
TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcagttatatatgtgttttactcgtt---tttgcatcccttttcagatactggaaaatccactgtgatatacgcttctgttgctttttgttccacgacagataactgacataatttaacctcgataaag
  ||  ||   |||  |||||||||| |||||||||||||||||||| ||||| ||||  |||||||||||||| || | ||| |  ||| ||||| |||||| | ||        | | | | | ||  |    ||  | ||  |   ||   | |  | || | |  ||| |  ||  |||||  |||    |     |                                                
GTTGGTCAACCCCCCGAAAATTGGACAAGTGGAGTTGATCTTGGCCGACTTCTTGATCTCCTTGAACTTGATCTCATTACAACAAATGAAGCACTCCAAGgtttg-caaacattcagttattaataattcaaacattcaattctctcaattaatagcagtattaaaaggctgcagtattgactgttttattgtttcacaat------------------------------------------------

upper sequence: GRMZM2G020210_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv19s0027g00520.t01 (Vitis vinifera), 5'ss of exon 4
TGTGACCATGGCCCTCAA-AATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttcct--tgctttcagttatatatgtgttttactcgtttttgcatcccttttcagatactggaaaatccactgtgatatacgcttctgttgctttttgttccacgacagataactgacataatttaacctcgataaag
 |    | |  ||||  | |||||||| |||| ||||||| |||| ||||||||  |||  |||||||||||||| |||| ||| || |||   |||| ||||| | | ||| |||  ||| ||   | |  |     | |   |  || |   || |||  |  |||| |  ||  |    |    ||| |   |||| |                                                
-GCTGGCTTACCCCTAGAGAATTGGACAAGTGCAGTTGATATTGGGCGCCTTCTAAATCTCCTTGAACTTGATCTCATCACAACTAGTGAAGGGCTCAGAGgtttgtcctttccctaatgccttatatca-gttcccttgtgttttattgtaatattcctcctt-gatagtctaat-tttttttccctatccctctctgatttc---------------------------------------------

upper sequence: GRMZM2G020210_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv01s0011g01870.t01 (Vitis vinifera), 5'ss of exon 6
TGTGACCATGGCCCTCAAAATTGGACCAGTGGAGTTGATCTTGGCCGCCTTCTGGATCGTCTTGAACTTGATCTTATCATAACCAGCGAATCACTCAAAGgttcggcattttccttgctttcagttatatatgtgttttactcgtttttgcatcccttttcagatactggaaaatccactgtgatatacgcttctgttgctttttgttccacgacagataactgacataatttaacctcgataaag
  ||  ||   |||  | |||||||| |||||||| |||||||| || ||||| || |  || |||||||||||||||| ||||||||||   ||  |||||| |   ||||   | |    | |  | | |       | |  ||||||    ||| || |  |      |  |  |    || |  |     | || |                                              
GTTGGTCAACCCCCGGAGAATTGGACTAGTGGAGTAGATCTTGGACGTCTTCTTGACCTCCTCGAACTTGATCTTATCACAACCAGCGAAGGGCTTCAAGgtttgtagttttgaat-cgccaaatcgtctttag----catttatttttggtagcctgtttatgtttgattacctttaaatggagaggcaggcttattacccagc-----------------------------------------