1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTGGTGGTTGACGAGAACGCCTCCTCCTTCCGATACACGCGCTCCCTCCTCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAGgtccgtccgtccgcctctacatcttcgatgtcgatcccaccggacctccgatgtttcgtgtgtttttgtctgattcggtcctccgctccctccttttctcttgtatag
species | Zea mays |
transcript | GRMZM2G017334_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAG ATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGACCACCAGGGCCACGGCEST: gi|31355922|gb|CD440279.1|CD440279
genomic: TCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAGgtccgtccgt ... tcttgtatagATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGACCACCAGGGCCACGGC
EST: TCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAG ATCAGCCGCAGGGTGTTCGATGTCATCCGGGGTGACCACCAGGGCCACGGCEST: gi|71444659|gb|DR825709.1|DR825709
genomic: TCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAGgtccgtccgt ... tcttgtatagATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGACCACCAGGGCCACGGC
EST: TCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAG ATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGACCACCAGGGCCACGGCEST: gi|74245291|gb|DT653205.1|DT653205
genomic: TCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAGgtccgtccgt ... tcttgtatagATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGACCACCAGGGCCACGGC
EST: TCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAG ATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGACCACCAGGGCCACGGC
genomic: TCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAGgtccgtccgt ... tcttgtatagATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGACCACCAGGGCCACGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGTGGTTGACGAGAACGCCTCCTCCTTCCGATACACGCGCTCCCTCCTCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCCTTCGAGgtccgtccgtccgcctctacatcttcgatgtcgatcccaccggacctccgatgtttcgtgtgtttttgtctgattcggtcctccgctccctccttttctcttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA