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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggactggcgtcgatttctcctccgttttttttctcgcgttcttacttctaagcgattgatctcgttgattgatccgcgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G007915_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148931184|gb|EC873916.2|EC873916
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126347|gb|FL147246.1|FL147246
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127267|gb|FL147254.1|FL147254
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127265|gb|FL147252.1|FL147252
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTANTTYTTGGGCGCGGG
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGT-GGGCGCGGG
EST: gi|211127279|gb|FL147266.1|FL147266
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCKAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126344|gb|FL147243.1|FL147243
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127272|gb|FL147259.1|FL147259
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGG
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCT-ACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGG
EST: gi|37421889|gb|CF648648.1|CF648648
EST:     TGTCCCGCCCCGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggactggcgtcgatttctcctccgttttttttctcgcgttcttacttctaagcgattgatctcgttgattgatccgcgcgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG