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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAGTTCCTGCAGTTCGCCCGCGGGAAGTCGCTGGCCTTCGTCGGGGACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggttacttcgtttatgtgctcggctgctcctgagtgatgatgatgacaacggcctgctctgccgccgagacgcatcagactttgcgcagctga...

Basic information

species Zea mays
transcript GRMZM2G004183_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004183_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g46400.1 (Oryza sativa), 5'ss of exon 1
GCTGCAGTTCCTGCAGTTCGCCCGCGGGAAGTCGCTGGCCTTCGTCGGGGACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgt-tggttacttc-----gtttatgtgctcggctgctcc-------tgagtgatg-------atgatgacaacggcctgctctgcc------gccgagacgcatcagactttgcgcagctga------------------------------------------
  |||||||||| ||||||  |||    |||||||| ||||||||||| ||||||||||| || ||||||||||| || |||||||||||||| ||||||||  |  || || |||      | || |  |   | |   | |       || | | ||        || ||||||||     |  ||||      ||  |   || | ||||   | | ||||||                                          
CGTGCAGTTCCTACAGTTCAACCGTCACAAGTCGCTCGCCTTCGTCGGTGACTCGCTGGCTCGCAACCACATGCAATCCCTGCTCTGCCTCCTCTCCCAGgtaagagtgcttgctttcacaggcttttcagtctgccaagttcaattctttggggggtgtgtgtgtgtggtgacaacgtgagacgttgccatgtttgcacaatggcctgagacggcgagaagctgacccgatggttttcctttcctctctgggacggggcaactgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148980376|gb|EE027108.2|EE027108
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|74241586|gb|DT649500.1|DT649500
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCANGGACCTGTCGGCGAACCCGTCGGACCAGAAACA-GGT
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAA-CAAGGT
EST: gi|12046398|gb|BF728537.1|BF728537
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCACAG                         GTGGCGTATCCC-AGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148954418|gb|EC899838.2|EC899838
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAGGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71298554|gb|DR785252.1|DR785252
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71774222|gb|DR972100.1|DR972100
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|50324871|gb|CO519997.1|CO519997
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148990600|gb|EE031995.2|EE031995
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148931874|gb|EC877338.2|EC877338
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148963864|gb|EE014970.2|EE014970
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|78091366|gb|DV519740.1|DV519740
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|91873417|gb|EB403374.1|EB403374
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148969143|gb|EE019882.2|EE019882
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|76921017|gb|DV168418.1|DV168418
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|76932942|gb|DV173248.1|DV173248
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|6918499|gb|AW400029.1|AW400029
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCACAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|50323054|gb|CO518180.1|CO518180
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148961491|gb|EE012242.2|EE012242
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|31350425|gb|CD434782.1|CD434782
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCCCTTAATCCTGTCACAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|74236494|gb|DT644408.1|DT644408
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCT
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCT
EST: gi|6918548|gb|AW400078.1|AW400078
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTTCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGNGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|78114105|gb|DV532494.1|DV532494
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGGCGACCCCGTCGGACCAGATCAAG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGG-CGAACCCGTCGGACCAGAACAAG
EST: gi|33466590|gb|CF243639.1|CF243639
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149063795|gb|EE286385.2|EE286385
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148939537|gb|EC884135.2|EC884135
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGA
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGA
EST: gi|78073887|gb|DV502321.1|DV502321
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148951122|gb|EC896794.2|EC896794
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71438616|gb|DR819666.1|DR819666
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|78108393|gb|DV526811.1|DV526811
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149015532|gb|EE045407.2|EE045407
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCCGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|89247905|gb|DY619691.1|DY619691
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTG
EST: gi|74237845|gb|DT645759.1|DT645759
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTTCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGACCAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71768591|gb|DR966528.1|DR966528
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|101398784|gb|EB821264.1|EB821264
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCG
EST: gi|78113005|gb|DV531399.1|DV531399
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|78083583|gb|DV511976.1|DV511976
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|76014855|gb|DT942025.1|DT942025
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|50333640|gb|CO528766.1|CO528766
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|78081029|gb|DV509441.1|DV509441
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|78179748|gb|DV550121.1|DV550121
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCACAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|74239498|gb|DT647412.1|DT647412
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71433453|gb|DR814503.1|DR814503
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71764674|gb|DR962611.1|DR962611
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148948115|gb|EC893624.2|EC893624
EST:     ACTCGCTGGCGCGGGACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|78118206|gb|DV536593.1|DV536593
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71311633|gb|DR792210.1|DR792210
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCTCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGT
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGT
EST: gi|50330828|gb|CO525954.1|CO525954
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCG
EST: gi|101401989|gb|EB822614.1|EB822614
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCG
EST: gi|93014582|gb|EB640102.1|EB640102
EST:     ACTCGCTGGCGCGGAACCCCATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCCGTATCCC
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGC-GTATCCC
EST: gi|71427956|gb|DR809006.1|DR809006
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|91868638|gb|EB400096.1|EB400096
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148991326|gb|EE032805.2|EE032805
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|211099377|gb|FL022419.1|FL022419
EST:     CTCGCTGGCGCGGAAACACATGCAGTCGCTGCTCTGCCTCCCTGTCC-AG                         GTGGCGTATCCCA-GGACCTGTCGGCGAACCC
genomic: CTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCC-TGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCC
EST: gi|91051804|gb|EB162222.1|EB162222
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCT
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCT
EST: gi|149106073|gb|EE291734.2|EE291734
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149060867|gb|EE157322.2|EE157322
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149078439|gb|EE167216.2|EE167216
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148959354|gb|EC905407.2|EC905407
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149055747|gb|EE156456.2|EE156456
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|91868980|gb|EB400231.1|EB400231
EST:     ACTCGCTGGCGCGGACCCCC-TGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCC
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCC
EST: gi|91872677|gb|EB402634.1|EB402634
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71434794|gb|DR815844.1|DR815844
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|76288377|gb|DV027945.1|DV027945
EST:     CTCGCTGGGGCGGAAACACATGCAGTCGCTGCTCTGCCCTC-TGTCCCAG                         GTGGCGTATCCCCAGGACCTGTCGGC
genomic: CTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCC-TCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGC
EST: gi|148982738|gb|EE028557.2|EE028557
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|91874320|gb|EB404277.1|EB404277
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|148991476|gb|EE032988.2|EE032988
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCCGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149095311|gb|EE180946.2|EE180946
EST:     CTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGGTCC-AG                         GTGGCGTATCCCAAGGACCTGTCGGC
genomic: CTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTG-TCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGC
EST: gi|148931967|gb|EC875220.2|EC875220
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71446578|gb|DR827628.1|DR827628
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|74234193|gb|DT642107.1|DT642107
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149073944|gb|EE162271.2|EE162271
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|93281443|gb|EB673707.1|EB673707
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|74242044|gb|DT649958.1|DT649958
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71327080|gb|DR800186.1|DR800186
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|76934112|gb|DV173735.1|DV173735
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149001376|gb|EE038671.2|EE038671
EST:     CTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGCTCC-AG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGT
genomic: CTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTG-TCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGT
EST: gi|149076090|gb|EE164666.2|EE164666
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|76922889|gb|DV169226.1|DV169226
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71449586|gb|DR830636.1|DR830636
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71438699|gb|DR819749.1|DR819749
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|149044683|gb|EE047656.2|EE047656
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|91872692|gb|EB402649.1|EB402649
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|71772332|gb|DR970268.1|DR970268
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
EST: gi|76293008|gb|DV032576.1|DV032576
EST:     ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAG                         GTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG
genomic: ACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 26

GCTGCAGTTCCTGCAGTTCGCCCGCGGGAAGTCGCTGGCCTTCGTCGGGGACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTGTACCACTACCGGGCGTACAACTTCACCATCAGCATGTTCTGGTCGCCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 38

GCTGCAGTTCCTGCAGTTCGCCCGCGGGAAGTCGCTGGCCTTCGTCGGGGACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTGTACCACTACCGGGCGTACAACTTCACCATCAGCATGTTCTGGTCGCCGT


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 35

GCTGCAGTTCCTGCAGTTCGCCCGCGGGAAGTCGCTGGCCTTCGTCGGGGACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTGTACCACTACCGGGCGTACAACTTCACCATCAGCATGTTCTGGTCGCCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 112

GCTGCAGTTCCTGCAGTTCGCCCGCGGGAAGTCGCTGGCCTTCGTCGGGGACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggt ... ctggctgcagGTGGCGTATCCCAAGGACCTGTCGGCGAACCCGTCGGACCAGAACAAGGTGTACCACTACCGGGCGTACAACTTCACCATCAGCATGTTCTGGTCGCCGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCAGTTCCTGCAGTTCGCCCGCGGGAAGTCGCTGGCCTTCGTCGGGGACTCGCTGGCGCGGAACCACATGCAGTCGCTGCTCTGCCTCCTGTCCCAGgtccgttggttacttcgtttatgtgctcggctgctcctgagtgatgatgatgacaacggcctgctctgccgccgagacgcatcagactttgcgcagctga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT