Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAACATCGTGAGGCTGCGCGCCTACTACTGGTCCGCCGACGAGAAGCTCGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgccaaatgcctttgcggttactacttctctgtgcatttcatatccgcgggctcacatgtacggctgggcgtaccattccggatgtggactctag...

Basic information

species Zea mays
transcript AC235540.1_FGT002
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148961050|gb|EE011752.2|EE011752
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|78123896|gb|DV542280.1|DV542280
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149105987|gb|EE291625.2|EE291625
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|148936097|gb|EC880160.2|EC880160
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149080128|gb|EE169149.2|EE169149
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149100352|gb|EE186422.2|EE186422
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149112484|gb|EE295355.2|EE295355
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|94478489|gb|EB707447.1|EB707447
EST:     TCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: TCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|88753223|gb|DY537364.1|DY537364
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149108371|gb|EE292709.2|EE292709
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|148983413|gb|EE029411.2|EE029411
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149082704|gb|EE171921.2|EE171921
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|89248631|gb|DY620417.1|DY620417
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|148928477|gb|EE285292.2|EE285292
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149065667|gb|EE286787.2|EE286787
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|91876526|gb|EB406483.1|EB406483
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149043941|gb|EE047420.2|EE047420
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149105988|gb|EE291626.2|EE291626
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|148973174|gb|EE024247.2|EE024247
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|149098398|gb|EE184375.2|EE184375
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|148970814|gb|EE021577.2|EE021577
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
EST: gi|148969189|gb|EE019935.2|EE019935
EST:     CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCG                         GCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA
genomic: CGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 35 (downstream exon)
Score: 9

CCCAACATCGTGAGGCTGCGCGCCTACTACTGGTCCGCCGACGAGAAGCTCGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCAAGGGTGCGGCACGCGGGCTAGCGCACCTTCACGAGTGCAGCCCACGCCG


Block sizes: 44 (upstream exon), 35 (downstream exon)
Score: 12

CCCAACATCGTGAGGCTGCGCGCCTACTACTGGTCCGCCGACGAGAAGCTCGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCAAGGGTGCGGCACGCGGGCTAGCGCACCTTCACGAGTGCAGCCCACGCCG


Block sizes: 36 (upstream exon), 19 (downstream exon)
Score: 4

CCCAACATCGTGAGGCTGCGCGCCTACTACTGGTCCGCCGACGAGAAGCTCGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCAAGGGTGCGGCACGCGGGCTAGCGCACCTTCACGAGTGCAGCCCACGCCG


Block sizes: 49 (upstream exon), 20 (downstream exon)
Score: 9

CCCAACATCGTGAGGCTGCGCGCCTACTACTGGTCCGCCGACGAGAAGCTCGTTATCACGGATTTCGTCAACAACGGCAACCTCGCGACGGCGTTGCGCGgtgagtgcca ... tttcctgcagGCCGGTCCGGTCAGCCAAGCCTATCATGGACCCTACGGCTGCGGATCGCCAAGGGTGCGGCACGCGGGCTAGCGCACCTTCACGAGTGCAGCCCACGCCG