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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttcccagtattctgagtttgttttatatttagacctcagctatgtcaatgatattttgctttgtttatttatttgctcattttttaattgttgcatgcaactttttacag

Basic information

species Vitis vinifera
transcript Vv19s0176g00140.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 9
GCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttcccagtattctgagtttgtttta--tatttagacctcagctatgtcaatgatattttgctttgtttatttatttgctcattttttaattgttgcatgcaactttttacag
|| |||||||||||| |||| || || ||||||||| || ||||||||||||| || || |||| |  | ||  || |      | |||||   |||  |    ||| |||     |    |||    |||| || || |||  |||||| | ||                        
GCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcctttactgaagcatagtttttgttatgcaagtttcaactaaagttagttgattcatatttgatt-ttcatt--ctcattctgtag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418099|gb|EC984217.1|EC984217
EST:     ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG                         GGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
genomic: ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttccc ... ctttttacagGGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
EST: gi|110424617|gb|EC990984.1|EC990984
EST:     ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG                         GGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
genomic: ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttccc ... ctttttacagGGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
EST: gi|110379205|gb|EC944385.1|EC944385
EST:     ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG                         GGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
genomic: ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttccc ... ctttttacagGGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
EST: gi|110421800|gb|EC988101.1|EC988101
EST:     ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG                         GGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
genomic: ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttccc ... ctttttacagGGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
EST: gi|33404787|gb|CF210414.1|CF210414
EST:     ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG                         GGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
genomic: ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttccc ... ctttttacagGGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
EST: gi|56409696|gb|CX017948.1|CX017948
EST:     ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG                         GGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT
genomic: ATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttccc ... ctttttacagGGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTT