1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACTCTTGACATTTGTTGCTGCCAGGAGCTTGGTATATAATCTGTATTACTAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttatatcctgtatcttcaagcaaatgctggctgtgacaggagattgtttctgcatcatttaatcctttggtatggtaatattgctttacttgtag
species | Vitis vinifera |
transcript | Vv19s0093g00560.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG GTGCTTTACCAEST: gi|110416701|gb|EC982698.1|EC982698
genomic: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCA
EST: GTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG GTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCAEST: gi|34546278|gb|CF514510.1|CF514510
genomic: GTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
EST: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG GTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCAEST: gi|34544722|gb|CF512954.1|CF512954
genomic: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
EST: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG GTGCTTTCCCACCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTCCCAEST: gi|33401822|gb|CF207449.1|CF207449
genomic: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
EST: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG GTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
genomic: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCTTGACATTTGTTGCTGCCAGGAGCTTGGTATATAATCTGTATTACTAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttatatcctgtatcttcaagcaaatgctggctgtgacaggagattgtttctgcatcatttaatcctttggtatggtaatattgctttacttgtag
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