Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTTGGGGAATATGGTCGCAGCACTTGCTGAGCAACAATCAACAAGGCTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGgttggttgaaatttacagtgatgttggctgatctcatcccatttttcgtatcttatttgtatttctaacagccatggttttggtcttctatcatacag

Basic information

species Vitis vinifera
transcript Vv19s0090g00930.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G43220.1 (Glycine max), 5'ss of exon 7
GAGTTTTGGGGAATATGGTCGCAGCACTTGCTGAGCAACAATCAACAAGGCTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGgttggttga-aatttacagtgatgt---tggctgatctcatcccatttttcgtatcttatttgtat-ttctaacagccatggttttggtcttctatcatacag--------------------------------
||||| ||||||| ||||| ||||| || ||||||||||  ||| |  | ||  | |||||||| |||||||| ||||||||  ||||||| || ||||||||||||   ||||||||      |   ||  |  ||      | |   |   | || |  ||  | || | | |   |   |||| ||  || ||  |  |                                 
GAGTTCTGGGGAACATGGTGGCAGCTCTCGCTGAGCAACCCTCATCTCGTCTATTGAAGCATATCATTCGATGCTATCTTCGCCTATCAGATAATCCAAGgttggttactaatttacaactccatgcatgtgtattccttcttcttcccttccacctaaactgcctcttgtcatacataccctttttgttatcaattttcaaaactctaattgaacttcaatctggttaaaacag

upper sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 7
GAGTTTTGGGGAATATGGTCGCAGCACTTGCTGAGCAACAATCAACAAGGCTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGgttggttgaaatttacagtgatgttggctgatctcatcccatttttcgtatcttatt-tgtatttctaacagccatggttttggtcttctatcatacag
|||| ||||| ||||||||     ||||||  ||||| |  ||  |  | ||| | |||||||| ||||| || ||||| || ||||||||||||||||||||| || |     | |   |       |  ||  |    | ||||||||  ||||  ||| |||         ||| ||  | | || | | |   ||
GAGTGTTGGGAAATATGGTTCAGTCACTTGTGGAGCAGCCTTCTCCGCGCCTTTTGAAGCATATCATTCGTTGCTATCTCCGTTTATCAGACAACCCAAGgttgatttagcccaaaacaaac-----ttactcagaaatgacttttcgtagtttatcatgtgtttggctttcttatgcttaagcttttgtgttaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384705|gb|EC949163.1|EC949163
EST:     CTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAG                         GGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCAC
genomic: CTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGgttggttgaa ... tatcatacagGGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCAC
EST: gi|33405642|gb|CF211269.1|CF211269
EST:     CTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAG                         GGCTTGTGATGCATTAAGAAATTCCCTTCCGGACATGTTAAAAGACGCCAC
genomic: CTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGgttggttgaa ... tatcatacagGGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCAC
EST: gi|110391951|gb|EC957020.1|EC957020
EST:     CTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAG                         GGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCAC
genomic: CTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGgttggttgaa ... tatcatacagGGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCAC
EST: gi|110730135|gb|EE106867.1|EE106867
EST:     CTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAG                         GGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCAC
genomic: CTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGgttggttgaa ... tatcatacagGGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCAC