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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtattggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttccttaagaaaaaatcatttttcttgaacag

Basic information

species Vitis vinifera
transcript Vv15s0046g03390.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 11
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtattggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttccttaagaaaaaatcatttttcttgaacag
| | |||||||| ||||||||||||||||||   || || ||||||||||| || ||||| || |||||||| || || || ||||| || |||||  |||||| | ||  |||||    ||||||| || |    |||  |  | |    ||   |    ||  ||| | |        |   | |   || |    
TCGTCCAATTTACAAGCAAATTGCTGAAAATAGGAACGCTGAGATATTTTCAGCAAATACTCTCCTTGTTATTTTTGGAACAAGTCTTCTCACAGCTCGGgtat-gtatatttttc----ttattat-atcccagccttgcat-agttgcattccttgaatctactttgcatgttgttttactctctcatttcag---

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 10
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtattggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttccttaagaaaaaatcatttttcttgaacag
| | || ||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||| || || || ||||| ||||||||| |||| |    |  | |  ||  ||||| |    | |||    | |  |  |||||    || | |||  |  ||| |  |  |  |||            
TCGGCCTATTTACAAGCAAATTGCTGAAAATCAGAATGCTGAGATATTTTCAGCAAATACACTCCTTGTTATTTTTGGCACAAGTCTTCTTACAGCCCGGgttt---gtattctatatgcttattttctagcctttgcactgcttaa-aagttaaaactacttttgatt-ttatggtactactattcacag-------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G093643_T01 (Zea mays), 5'ss of exon 11
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtattggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttccttaagaaaaaatcatttttcttgaacag
  | || ||||| || ||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||| || || || ||||| ||||||||| ||||       | |||  |||  | ||||| |       ||| |    | ||      | |   |||| |  |  |   | |                  
CCGGCCTATTTACAAACAAATTGCTGAAAATCAGAATGCTGAGATATTTTCAGCAAATACACTCCTTGTTATTTTTGGCACAAGTCTTCTTACAGCCCGGgttc-----gttttctatatgt-ttattttctagcctttacattgcttaaaactactattgattttatggtctattcacag-----------------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 10
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtat---------tggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttt-----tttccttaagaaaaaatcatttttcttgaacag--------------------------------------------------------------------------------
| | || || |||||||| ||||| || |||||||||||||| ||||||||||||||||||||  |||||||  | |||||||| || || ||||||||||||            |||| ||||  |     |||||   | ||  ||       |  || |  | |    |||     ||| |   ||  |   |  | |   |||||  |                                                                                
TCGGCCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGgtaggtgttcataccgatgttttttctttcccttatttccccttggtttgggtttttgagctaagccaaggtttgacagttttcaacagttattcttgtgtccgttgaagtgatgagatgacttttttttttggtgtgccaaccttacttttacccctttttttaaaaataatttttctttacttaaaacag

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G01600.1 (Glycine max), 5'ss of exon 4
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtattggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttccttaagaaaaaatcatttttcttgaacag------------
| |||| || |||||||| ||||| || |||||||||||||| ||||||||||||||||||||  |||||||  | ||||| || || || ||||||||||||      | | ||||||   | | || ||| ||||   ||     |    | ||| |   |||||    ||||  ||  |        || |||||            
TCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAGCCAGGgta------ggtgttcata-ccaatgtttttcctttcccttatttccc---ctttgtttgggtttttgagctaagccaaggtttggcagtttcaacagttattcttgtgt

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 14
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtat----tggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttcctta----agaaaaaatcatttttcttgaacag
| ||||||| || |||||  |||| ||||||||||||||||| || || || ||||||||||| ||||||||  | || || ||||| ||||||||||| ||||    |   || || || || |  || | ||| | | ||| |         |||   ||||   |||||  |||    |||||  | ||  ||| |       
TCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATTTTCTCAGCCAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGAgtatgtcatatgtgattgtcctattgcttttcattttatcctttttgggtgtttgttccttctcatgtttttatttattgtagaaatgagcaaatttttc------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 18
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtat----tggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttccttaa-gaaaaaatcatttttcttgaacag
| ||||||| || |||||  |||| ||||||||||||||||| || || || || |||||||| ||||||||  | || || ||||| ||||||||||||||||    |   || || || || |  || ||||| | | ||| |         |||   ||||   |||||  | |  | | |||| |      ||  |   
TCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATTTTCTCAGCTAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGGgtatgtcatatgtgattgtcctattgctttttattttatccttcttgggtgtttgttccttctcatgtttttgttcattgtagaaatgagcaacttttca---

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtat-tggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttccttaagaaaaa--atcatttttcttgaacag-
  | || || || ||||||||||| ||||| | |||||| |||||||| || |||||||||||||| |||||  | ||||||||| | |||||||| ||||||| |   || |||||    ||  |  | |  | ||||  ||   ||   | | |||||   || |||| |||||| |||   |   |||  || ||    
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgattttccgtgttggtgct-tggtattctcgta---attttgctttgtctt--ttgtttcgttaagataaattgtttctttctttaaattag

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 11
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtattgg-atgcttttcataattattattattcttttcttataccaatcaagttgtgtctccc--ttttttccttaagaaaaaatcatttttcttgaacag
| ||||||| || ||||||||||| ||||||| ||| || |||||||| |||||||| || ||||| |||||  | ||||||||| | || ||||| |||||||     ||   ||  |     | | || | |  |   || ||| | |  |   |||| |   ||||| |  |    | ||||||              
TCGACCAATCTACAAGCAAATTGCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACTAGTTTACTGACAGCTAGGgtatgaccgtgaccttgttggcattgagtagtttactgacatgccagt-acttcccgtctgctaatttttccagtttctataaatcag-------------