1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGATTGCCTGCCTCGACTTTAATCTTCAAAGGACAAAGATGCAATTGGGTGTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagttaataagcttcaaaatttcttgagattagaatgcacataacttgagatcgtttttgtttttttttttttttgataagctaacttgagatcg...
species | Vitis vinifera |
transcript | Vv15s0021g02230.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAG AGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGCEST: gi|351037610|gb|FQ462593.1|FQ462593
genomic: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagtt ... atctttgcagAGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
EST: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAG AGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGCEST: gi|351017726|gb|FQ436079.1|FQ436079
genomic: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagtt ... atctttgcagAGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
EST: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAG AGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGCEST: gi|37187670|gb|CF607023.1|CF607023
genomic: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagtt ... atctttgcagAGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
EST: GCTTGAGAAAATTCGTCAAAG AGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGCEST: gi|71882935|gb|DT031990.1|DT031990
genomic: GCTTGAGAAAATTCGTCAAAGgtgatcagtt ... atctttgcagAGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
EST: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAG AGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGCEST: gi|30322269|gb|CD005531.1|CD005531
genomic: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagtt ... atctttgcagAGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
EST: GTCCAAGTATTGGTCACTGATCCAAGGGAGCTTGAGAAAATTCGTCAAAG AGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGCEST: gi|110688105|gb|EE066273.1|EE066273
genomic: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagtt ... atctttgcagAGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
EST: GTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAG AGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGCEST: gi|351048864|gb|FQ431529.1|FQ431529
genomic: GTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagtt ... atctttgcagAGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
EST: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAG AGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
genomic: GTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagtt ... atctttgcagAGAAGCTGATATGACTAAAGAGCGAATTGAGAAACTTCTGAAAGCTGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTGCCTGCCTCGACTTTAATCTTCAAAGGACAAAGATGCAATTGGGTGTCCAAGTATTGGTCACCGATCCAAGGGAGCTTGAGAAAATTCGTCAAAGgtgatcagttaataagcttcaaaatttcttgagattagaatgcacataacttgagatcgtttttgtttttttttttttttgataagctaacttgagatcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT