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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCTTGACACTCATGTGGGCCTCATGGCAGAGAAGAAGATCAAGGGTTTTGCTATAAGTGAAACAGCTTTTGTCATATTCATCGTCATGGCTTCCAGgtaaacaaaacaaaataatggaatattaaaatagacctttaattgaattggttattgaccgtatttggtgggtttggccatgcgtggaatgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g01670.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 9
AAGAGCTTGACACTCATGTGGGCCTCATGGCAGAGAAGAAGATCAAGGGTTTTGCTATAAGTGAAACAGCTTTTGTCATATTCATCGTCATGGCTTCCAGgtaaacaaaacaaaa---taatggaatattaaaatagacctttaattga---attggtta---ttgaccgtatttggtgggtttggccatgcgtggaatgcag
||||||||||    |  || ||||| ||||| |||||||| || ||||||||||| || ||||| ||||||||||| |||||| |  |||||||  |||||||||   ||  |||   |||  | |   |    |  | |||   || |   |   |  |   ||||  |  |        |     ||    |    ||   
AAGAGCTTGATGTGCTGGTAGGCCTTATGGCGGAGAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaattaaaacttaaaagcacccttttttctaacttacgtttatacacctgccaaagttgaatgcttcccacaaatcatatcacttctatgttg---

upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 9
AAGAGCTTGACACTCATGTGGGCCTCATGGCAGAGAAGAAGATCAAGGGTTTTGCTATAAGTGAAACAGCTTTTGTCATATTCATCGTCATGGCTTCCAGgtaa--acaaaacaaaataatggaatattaaaatagacctttaattgaattggttattgaccgtatttggtgggtttggccatgcgtggaatgcag-----
||||||||||    |  || ||||||||||| || ||||| || ||||||||||| || ||||| ||||||||||| |||||| |  |||||||  ||||||||   |||   |||  |      | ||||   |    | ||   |  ||    |||||  |  |          |  |  | | | |  || |      
AAGAGCTTGATGTACTGGTAGGCCTCATGGCGGAAAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaattaaaagcaccctttttttaactcatgtttatatacgccttccaaattgaatgcttccaacaatcatatcagttc-taggttgtaagcttt

upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 9
AAGAGCTTGACACTCATGTGGGCCTCATGGCAGAGAAGAAGATCAAGGGTTTTGCTATAAGTGAAACAGCTTTTGTCATATTCATCGTCATGGCTTCCAGgtaaacaaaacaaaataatggaatattaaaatagacctttaattgaattgg-ttattgaccgtatttggtgggtttggcca-tgcgtggaatgcag-------
||||| | ||    |  || |||||||||||||||||||| || ||||||||||| || || || |||||||||   ||||||||  ||||| |   ||||||||   ||||||  || | | | ||   |   |  | ||  |  ||||| ||| |     || ||| | ||  | |  | | ||   ||||          
AAGAGTTAGATCTACTAGTAGGCCTCATGGCAGAGAAGAAAATAAAGGGTTTTGCAATTAGCGAGACAGCTTTTACAATATTCATATTCATGTCAAGCAGgtaaa---aacaaataaaagcactgtttttaactatttatacctacattggcttaatacttctaattgttaggaatagaaagttcgaccaatgttaatcatca

upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 9
AAGAGCTTGACACTCATGTGGGCCTCATGGCAGAGAAGAAGATCAAGGGTTTTGCTATAAGTGAAACAGCTTTTGTCATATTCATCGTCATGGCTTCCAGgtaaacaaaa-caaaataatggaatattaaaatagacctttaattgaattggttattgaccgtatttggtgggtttggccatgcgtgg--aatgcag----------
| ||||||||   ||  ||||| || |||||||||||||| ||||| ||||||||||| ||||| || ||||||  ||| ||| || |||||||  | ||||| | |    | | |||     ||||  | |   |  |||  |||||    | |  |     ||| |    ||||    ||        |||  |           
AGGAGCTTGATCTTCTCGTGGGACTTATGGCAGAGAAGAAAATCAAAGGTTTTGCTATCAGTGAGACTGCTTTTTACATTTTCCTCATCATGGCCACAAGgtatatattttcgatatatatatatatatagaaccaagttttcttgaagatatcacag--taaattagaaaagtttaataatctaatactaatttaaacaatttcag