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GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactctttatacttcgtctagtgtcttgtgaaaatatgagaaaaagaaaagccctctgcaagtttaaaacctttcaccgaagcatccgaaaattgaacc...
species | Vitis vinifera |
transcript | Vv14s0060g02220.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|30303522|gb|CB980316.1|CB980316
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|34320550|gb|CF373304.1|CF373304
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|110384527|gb|EC948970.1|EC948970
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|77585681|gb|DV221932.1|DV221932
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|30329044|gb|CD012306.1|CD012306
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|30133940|gb|CB919279.1|CB919279
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|110386543|gb|EC951144.1|EC951144
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|71868070|gb|DT017125.1|DT017125
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|110368925|gb|EC933063.1|EC933063
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|77579507|gb|DV218595.1|DV218595
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAACEST: gi|27582331|gb|CB005026.1|CB005026
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
EST: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG GATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
genomic: GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactcttta ... ttttatgcagGATCTTCGGAGGAAGCTTCCAGTTACACGGACGCTATTCCCATGGCACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATCCTATTCAAATTTGCCAGACACCACTTTTAAGgtactctttatacttcgtctagtgtcttgtgaaaatatgagaaaaagaaaagccctctgcaagtttaaaacctttcaccgaagcatccgaaaattgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt