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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattttcattccatcagtgctaaattcttatccaccttcagtgcattaagatacaatagtggcagtgacttgcactgtgaatggcatttgaagcacttggatgacaacccatctgaattacgatcttttccccaatcaaaatcag

Basic information

species Vitis vinifera
transcript Vv14s0060g00230.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415561|gb|EC981480.1|EC981480
EST:     ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG                         GTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
genomic: ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattt ... tcaaaatcagGTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
EST: gi|110363756|gb|EC927367.1|EC927367
EST:     ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG                         GTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
genomic: ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattt ... tcaaaatcagGTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
EST: gi|18458238|gb|BM436516.1|BM436516
EST:     ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG                         GTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
genomic: ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattt ... tcaaaatcagGTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
EST: gi|110363559|gb|EC927156.1|EC927156
EST:     ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG                         GTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
genomic: ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattt ... tcaaaatcagGTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
EST: gi|110373299|gb|EC937521.1|EC937521
EST:     ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG                         GTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
genomic: ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattt ... tcaaaatcagGTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
EST: gi|110397107|gb|EC962828.1|EC962828
EST:     ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG                         GTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
genomic: ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattt ... tcaaaatcagGTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
EST: gi|110422538|gb|EC988864.1|EC988864
EST:     ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG                         GTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
genomic: ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattt ... tcaaaatcagGTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT
EST: gi|110696063|gb|EE074792.1|EE074792
EST:     ATATCAAAACCCCGCTATTCCTTCTCAATGCAGCCTATGATTCATGGCAG                         GTCCAGGCCAGTTTAGCTCCACCCTCAGCTGATCCCCATGGCTATTGGAAT
genomic: ATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAGgtaaggattt ... tcaaaatcagGTCCAGGCCAGTTTAGCTCCACCATCAGCTGATCCCCATGGCTATTGGAAT