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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTCTTACTTGGCCTCGTTTATGCCGTGGTCACCCCCATTTTACTTCCTTTCATAATAGTATTCTTCGGCTTGGCATATGTTGTATTTCGTCATCAGgtaaaagttggtattccttcacatttgtgtggaggaatctcctcctaccctaatcatattttccctgcccagttgttttacagtatagtgtttttcagttggtggttggaaaggaatctctgatgtaatatattatctctgtcctctctgcccaaattctttctctaataaaatttctggtggatatgtag

Basic information

species Vitis vinifera
transcript Vv12s0059g01090.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g51630.1 (Oryza sativa), 5'ss of exon 10
CTATTTCTTACTTGGCCTCGTTTATGCCGTGGTCACCCCCATTTTACTTCCTTTCATAATAGTATTCTTCGGCTTGGCATATGTTGTATTTCGTCATCAGgtaaaagttggtattccttcacatttgtgtggaggaatctcctcctaccctaatcatattttccctgcccagttgttttacagtatagtgtttttcagttggtggttggaaaggaatctctgatgtaatatattatctctgtcctctctgcccaaattctttctctaataaaatttctggtggatatgtag
 ||||||||||||||||| || ||||| ||||| || ||  | || |||||||||||| | |||||||||||  ||||||||||||| |  || || |||||||           ||    ||  |   ||   |||| |  |  |       |   | |     ||   |  |  |  | | ||   || |||  | |   |  || ||                                                                                 
ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaagga--------ccactgcagctacttgcgagaattttattgtgttaagttttaagtgattatgatgaactact--aaattagcttgctttgta-tgactatttagac--------------------------------------------------------------------------------

upper sequence: Vv12s0059g01090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G43910.1 (Glycine max), 5'ss of exon 10
CTATTTCTTACTTGGCCTCGTTTATGCCGTGGTCACCCCCATTTTACTTCCTTTCATAATAGTATTCTTCGGCTTGGCATATGTTGTATTTCGTCATCAGgtaaaagttggtattccttcacatttgtgtggaggaatctcctcctaccctaatcatattttccctgcccagttgttttacagtatagtgtttttcagttggtggttggaaaggaatctctgatgtaatatattatctctgtcctctctgcccaaattctttctctaataaaatttctggtggatatgtag---
 ||||||||||||||||| || ||||| || ||||| ||  || ||||||| | ||| ||||| ||||| |||||||||||||| || |  |||||||||||||||||| |   || |  |   |  | ||      | ||     |   ||||| |  |||   | |  | |     || |    ||   |||| ||          ||     || |   ||||| |||   ||||    |   |       | ||  || | ||  | |||  |||     ||  | |   
GTATTTCTTACTTGGCCTTGTGTATGCTGTAGTCACACCATTTCTACTTCCATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAGgtaaaagttagc--tcatgaaaggtcttctg------tttcaatgcaatttaatctttgtttt--tacaaactgaccatagacacgagaaattttaag----------gatgaatatttactatgtattattcaatcttcaacaattgaat---attttgttatgtagcataatgcctgaaatctaaatggcag